Basic Information
Gene Model:Bol031617
Gene Family:Protein Kinase Gene Families
Chromosome:C06
Scaffold:Scaffold000054
Sequence:
 | 
Gene Structure
Nucleotide Length:1304 bp
Transcript Length:1044 bp
Protein Length:347 aa
Strand:+
Location:C06: 23293904 : 23295207
Gene CDSs(2): 1-325 | 586-1304 |
Protein Sequence Features
Interpro
DatabaseTermsIdentifierStartEndE-valueInterPro IDDescription
PatternScanPS00108PROTEIN_KINASE_ST 163 175 NAIPR008271Serine/threonine-protein kinase, active site
PatternScanPS00107PROTEIN_KINASE_ATP 49 71 NAIPR017441Protein kinase, ATP binding site
HMMSmartSM00220no description 43 338 7.2e-28IPR002290Serine/threonine-protein kinase domain
HMMSmartSM00219no description 43 331 2.8e-11IPR020635Tyrosine-protein kinase, subgroup, catalytic domain
HMMPfamPF00069Pkinase 43 331 1.7e-38IPR017442Serine/threonine-protein kinase-like domain
Segsegseg 314 323 NANot foundNot found
superfamilySSF56112Protein kinase-like 15 331 7.9e-63IPR011009Protein kinase-like domain
ProfileScanPS50011PROTEIN_KINASE_DOM 43 341 33.347IPR000719Protein kinase, catalytic domain
Gene3DG3DSA:1.10.510.10no description 121 333 1.7e-39Not foundNot found
Gene3DG3DSA:3.30.200.20no description 37 119 3.9e-10Not foundNot found
HMMPantherPTHR23258SERINE-THREONINE PRO 18 338 2.3e-193Not foundNot found
HMMPantherPTHR23258:SF445RECEPTOR PROTEIN KIN 18 338 2.3e-193Not foundNot found
Gene Ontology
GO TermGO TypeDescription
GO:0004672 Molecular Function protein kinase activity
GO:0004674 Molecular Function protein serine/threonine kinase activity
GO:0005524 Molecular Function ATP binding
GO:0006468 Biological Process protein phosphorylation
Swiss-Prot
Best HitE_value Description
C0LGG41e-44Y1518_ARATH Probable LRR receptor-like serine/threonine-protein kinase At1g51860 OS=Arabidopsis thaliana GN=At1g51860 PE=2 SV=1
TrEMBL
Best HitE_value Description
B3LFC01e-173B3LFC0_ARATH At1g33260 OS=Arabidopsis thaliana PE=2 SV=1
KEGG
Best HitE_valueKOEC or Symbol Description
vvi:1002550924e-43K13429CERK1chitin elicitor receptor kinase 1
Gene Cluster
Orthologs
OrthoMCL GroupSpeciesGene List
ORTHOMCL3535(12 genes,8 taxa):Arabidopsis thalianaAT1G33260.1
ORTHOMCL3535(12 genes,8 taxa):Arabidopsis thalianaAT4G10390.1
ORTHOMCL3535(12 genes,8 taxa):Brassica oleraceaBol031617
ORTHOMCL3535(12 genes,8 taxa):Brassica rapaBra040013
ORTHOMCL3535(12 genes,8 taxa):Vitis viniferaGSVIVT01019727001
ORTHOMCL3535(12 genes,8 taxa):Oryza sativaOs02t0648100-01
ORTHOMCL3535(12 genes,8 taxa):Oryza sativaOs04t0540900-01
ORTHOMCL3535(12 genes,8 taxa):Populus trichocarpaPOPTR_0001s45900.1
ORTHOMCL3535(12 genes,8 taxa):Populus trichocarpaPOPTR_0011s15020.1
ORTHOMCL3535(12 genes,8 taxa):Sorghum bicolorSb0283s002010.1
ORTHOMCL3535(12 genes,8 taxa):Sorghum bicolorSb04g033400.1
ORTHOMCL3535(12 genes,8 taxa):Carica papayaevm.TU.supercontig_37.119
Tandem Duplication
ClusterGene Num.Gene List

The tandem genes of this gene was not detected with strict parameters, so there is no information collected in Bolbase.

Synteny Analysis
Synteny Genes
Compared to A.thaliana Compared to B.rapa
Synteny Regions
SpeciesRegionMapped SpeciesMapped RegionNum. of Genewise
B.oleraceaC06:22983214..24412371 (-)A.thalianaChr4:6173715..6464544 (+)17
SpeciesRegionMapped SpeciesMapped RegionNum. of Genewise
B.oleraceaC06:22698835..24412371 (+)B.rapaA05:10714606..11478244 (-)11
Trplicated Block
BlockBest HitStartENDChromosomeSubgenomeNum. of Gene Pairs on Block
BAT1G332601206450912066376Chr1Subgenome_III(LF)29
 
@2012 Department of Genomics and Molecular Biology, Oil Crops Research Institute.


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