Basic Information
Gene Model:Bol031560
Gene Family:Transcription Factor Families
Chromosome:C08
Scaffold:Scaffold000055
Sequence:
 | 
Gene Structure
Nucleotide Length:810 bp
Transcript Length:573 bp
Protein Length:190 aa
Strand:-
Location:C08: 37492973 : 37493782
Gene CDSs(2): 1-80 | 318-810 |
Protein Sequence Features
Interpro
DatabaseTermsIdentifierStartEndE-valueInterPro IDDescription
HMMSmartSM00380no description 6 69 3.5e-39IPR001471Pathogenesis-related transcriptional factor/ERF, DNA-binding
Segsegseg 162 176 NANot foundNot found
Segsegseg 37 50 NANot foundNot found
Segsegseg 72 97 NANot foundNot found
Gene3DG3DSA:3.30.730.10no description 5 66 8.5e-23IPR001471Pathogenesis-related transcriptional factor/ERF, DNA-binding
HMMPfamPF00847AP2 5 56 5.5e-21IPR001471Pathogenesis-related transcriptional factor/ERF, DNA-binding
ProfileScanPS51032AP2_ERF 6 63 22.076IPR001471Pathogenesis-related transcriptional factor/ERF, DNA-binding
superfamilySSF54171DNA-binding domain 5 66 7e-23IPR016177DNA-binding, integrase-type
Gene Ontology
GO TermGO TypeDescription
GO:0003677 Molecular Function DNA binding
GO:0003700 Molecular Function sequence-specific DNA binding transcription factor activity
GO:0006355 Biological Process regulation of transcription, DNA-dependent
Swiss-Prot
Best HitE_value Description
Q9XI337e-78WIN1_ARATH Ethylene-responsive transcription factor WIN1 OS=Arabidopsis thaliana GN=WIN1 PE=2 SV=1
TrEMBL
Best HitE_value Description
A1X3G91e-78A1X3G9_BRACI AP2 transcription factor OS=Brassica carinata GN=SHN1 PE=4 SV=1
KEGG
Best HitE_valueKOEC or Symbol Description
vvi:1002466416e-20K09286EREBPEREBP-like factor
Gene Cluster
Orthologs
OrthoMCL GroupSpeciesGene List

Note: the orthologous genes of this gene was not detected by OrthoMCL software with default parameters.

Tandem Duplication
ClusterGene Num.Gene List

The tandem genes of this gene was not detected with strict parameters, so there is no information collected in Bolbase.

Synteny Analysis
Synteny Genes
Compared to A.thaliana Compared to B.rapa
Synteny Regions
SpeciesRegionMapped SpeciesMapped RegionNum. of Genewise
B.oleraceaC08:36203949..39772111 (-)A.thalianaChr1:3009941..6730931 (+)399
SpeciesRegionMapped SpeciesMapped RegionNum. of Genewise
B.oleraceaC08:36906720..38791057 (+)B.rapaA09:2431805..3966665 (+)225
Trplicated Block
BlockBest HitStartENDChromosomeSubgenomeNum. of Gene Pairs on Block
AAT1G1536052835385284673Chr1Subgenome_I580
 
@2012 Department of Genomics and Molecular Biology, Oil Crops Research Institute.


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