Basic Information
Gene Model:Bol031457
Gene Family:Not classificated
Chromosome:C08
Scaffold:Scaffold000055
Sequence:
 | 
Gene Structure
Nucleotide Length:1339 bp
Transcript Length:801 bp
Protein Length:266 aa
Strand:-
Location:C08: 38052303 : 38053641
Gene CDSs(5): 1-376 | 459-557 | 848-975 | 1062-1159 | 1240-1339 |
Protein Sequence Features
Interpro
DatabaseTermsIdentifierStartEndE-valueInterPro IDDescription
HMMPfamPF05739SNARE 206 266 1.3e-14IPR000727Target SNARE coiled-coil region
HMMPantherPTHR19305SYNAPTOSOMAL ASSOCIA 4 266 2.3e-48Not foundNot found
ProfileScanPS50192T_SNARE 201 263 16.500IPR000727Target SNARE coiled-coil region
Coilcoilcoiled-coil 232 267 NANot foundNot found
Gene3DG3DSA:1.20.5.110no description 59 137 0.00072Not foundNot found
Gene3DG3DSA:1.20.5.110no description 197 265 3.2e-18Not foundNot found
Segsegseg 208 221 NANot foundNot found
HMMSmartSM00397no description 196 263 9.2e-09IPR000727Target SNARE coiled-coil region
HMMSmartSM00397no description 68 135 0.6IPR000727Target SNARE coiled-coil region
Gene Ontology
GO TermGO TypeDescription

Note: this gene was not detected its best hit in Swiss-Prot database.

Swiss-Prot
Best HitE_value Description
Q9LMG81e-127SNP30_ARATH Putative SNAP25 homologous protein SNAP30 OS=Arabidopsis thaliana GN=SNAP30 PE=2 SV=1
TrEMBL
Best HitE_value Description
A9PB462e-91A9PB46_POPTR Predicted protein OS=Populus trichocarpa GN=POPTRDRAFT_564278 PE=2 SV=1
KEGG
Best HitE_valueKOEC or Symbol Description
ath:AT1G138901e-126K08509SNAP29synaptosomal-associated protein, 29kDa
Gene Cluster
Orthologs
OrthoMCL GroupSpeciesGene List
ORTHOMCL12529(6 genes,5 taxa):Arabidopsis thalianaAT1G13890.1
ORTHOMCL12529(6 genes,5 taxa):Brassica oleraceaBol031457
ORTHOMCL12529(6 genes,5 taxa):Brassica rapaBra026875
ORTHOMCL12529(6 genes,5 taxa):Populus trichocarpaPOPTR_0008s09330.1
ORTHOMCL12529(6 genes,5 taxa):Populus trichocarpaPOPTR_0010s16780.1
ORTHOMCL12529(6 genes,5 taxa):Carica papayaevm.TU.supercontig_1.101
Tandem Duplication
ClusterGene Num.Gene List

The tandem genes of this gene was not detected with strict parameters, so there is no information collected in Bolbase.

Synteny Analysis
Synteny Genes
Compared to A.thaliana Compared to B.rapa
Synteny Regions
SpeciesRegionMapped SpeciesMapped RegionNum. of Genewise
B.oleraceaC08:37865901..38060399 (+)A.thalianaChr2:763011..1065372 (+)18
SpeciesRegionMapped SpeciesMapped RegionNum. of Genewise
B.oleraceaC08:36906720..38791057 (+)B.rapaA09:2431805..3966665 (+)225
Trplicated Block
BlockBest HitStartENDChromosomeSubgenomeNum. of Gene Pairs on Block
AAT1G1389047515814752844Chr1Subgenome_I580
 
@2012 Department of Genomics and Molecular Biology, Oil Crops Research Institute.


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