Basic Information
Gene Model:Bol031431
Gene Family:Transcription Factor Families
Chromosome:C08
Scaffold:Scaffold000055
Sequence:
 | 
Gene Structure
Nucleotide Length:1023 bp
Transcript Length:1023 bp
Protein Length:340 aa
Strand:-
Location:C08: 38298531 : 38299553
Gene CDSs(1): 1-1023 |
Protein Sequence Features
Interpro
DatabaseTermsIdentifierStartEndE-valueInterPro IDDescription
ProfileScanPS51032AP2_ERF 59 114 19.888IPR001471Pathogenesis-related transcriptional factor/ERF, DNA-binding
ProfileScanPS50863B3 182 287 14.339IPR003340Transcriptional factor B3
Segsegseg 2 15 NANot foundNot found
HMMSmartSM00380no description 59 120 5.8e-27IPR001471Pathogenesis-related transcriptional factor/ERF, DNA-binding
HMMPfamPF02362B3 181 289 1.5e-37IPR003340Transcriptional factor B3
HMMPfamPF00847AP2 58 107 3.9e-12IPR001471Pathogenesis-related transcriptional factor/ERF, DNA-binding
Gene3DG3DSA:2.40.330.10no description 169 299 1.2e-40Not foundNot found
Gene3DG3DSA:3.30.730.10no description 58 117 8.3e-16IPR001471Pathogenesis-related transcriptional factor/ERF, DNA-binding
superfamilySSF54171DNA-binding domain 58 117 1.7e-18IPR016177DNA-binding, integrase-type
Gene Ontology
GO TermGO TypeDescription
GO:0003677 Molecular Function DNA binding
GO:0003700 Molecular Function sequence-specific DNA binding transcription factor activity
GO:0006355 Biological Process regulation of transcription, DNA-dependent
Swiss-Prot
Best HitE_value Description
Q9ZWM91e-169RAV1_ARATH AP2/ERF and B3 domain-containing transcription factor RAV1 OS=Arabidopsis thaliana GN=RAV1 PE=1 SV=1
TrEMBL
Best HitE_value Description
B9SEJ01e-114B9SEJ0_RICCO DNA-binding protein RAV1, putative OS=Ricinus communis GN=RCOM_0705620 PE=4 SV=1
KEGG
Best HitE_valueKOEC or Symbol Description
ath:AT1G132601e-169K09287RAVRAV-like factor
Gene Cluster
Orthologs
OrthoMCL GroupSpeciesGene List
ORTHOMCL26460(2 genes,2 taxa):Brassica oleraceaBol031431
ORTHOMCL26460(2 genes,2 taxa):Brassica rapaBra026917
Tandem Duplication
ClusterGene Num.Gene List

The tandem genes of this gene was not detected with strict parameters, so there is no information collected in Bolbase.

Synteny Analysis
Synteny Genes
Compared to A.thaliana Compared to B.rapa
Synteny Regions
SpeciesRegionMapped SpeciesMapped RegionNum. of Genewise
B.oleraceaC08:36203949..39772111 (-)A.thalianaChr1:3009941..6730931 (+)399
SpeciesRegionMapped SpeciesMapped RegionNum. of Genewise
B.oleraceaC08:36906720..38791057 (+)B.rapaA09:2431805..3966665 (+)225
Trplicated Block
BlockBest HitStartENDChromosomeSubgenomeNum. of Gene Pairs on Block
AAT1G1326045421684543742Chr1Subgenome_I580
 
@2012 Department of Genomics and Molecular Biology, Oil Crops Research Institute.


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