Basic Information
Gene Model:Bol031348
Gene Family:Not classificated
Chromosome:C08
Scaffold:Scaffold000055
Sequence:
 | 
Gene Structure
Nucleotide Length:4067 bp
Transcript Length:1770 bp
Protein Length:589 aa
Strand:-
Location:C08: 38756927 : 38760993
Gene CDSs(5): 1-112 | 307-484 | 574-613 | 786-1360 | 3203-4067 |
Protein Sequence Features
Interpro
DatabaseTermsIdentifierStartEndE-valueInterPro IDDescription
HMMPfamPF00854PTR2 98 506 1.3e-163IPR000109Oligopeptide transporter
PatternScanPS01023PTR2_2 189 201 NAIPR018456PTR2 family proton/oligopeptide symporter, conserved site
PatternScanPS01022PTR2_1 87 111 NAIPR018456PTR2 family proton/oligopeptide symporter, conserved site
HMMPantherPTHR11654OLIGOPEPTIDE TRANSPO 1 574 8.6e-285Not foundNot found
HMMPantherPTHR11654:SF37OLIGOPEPTIDE TRANSPO 1 574 8.6e-285Not foundNot found
superfamilySSF103473MFS general substrat 6 571 1.1e-22IPR016196Major facilitator superfamily, general substrate transporter
Segsegseg 498 514 NANot foundNot found
Segsegseg 423 438 NANot foundNot found
Segsegseg 145 162 NANot foundNot found
Gene Ontology
GO TermGO TypeDescription
GO:0005215 Molecular Function transporter activity
GO:0006857 Biological Process oligopeptide transport
GO:0016020 Cellular Component membrane
Swiss-Prot
Best HitE_value Description
Q050850.0CHL1_ARATH Nitrate/chlorate transporter OS=Arabidopsis thaliana GN=CHL1 PE=2 SV=1
TrEMBL
Best HitE_value Description
Q433900.0Q43390_BRANA RCH2 protein OS=Brassica napus PE=2 SV=1
KEGG
Best HitE_valueKOEC or Symbol Description
ppp:PHYPADRAFT_1348141e-130K14638
Gene Cluster
Orthologs
OrthoMCL GroupSpeciesGene List
ORTHOMCL2295(14 genes,8 taxa):Arabidopsis thalianaAT1G12110.1
ORTHOMCL2295(14 genes,8 taxa):Brassica oleraceaBol029098
ORTHOMCL2295(14 genes,8 taxa):Brassica oleraceaBol031348
ORTHOMCL2295(14 genes,8 taxa):Brassica rapaBra016789
ORTHOMCL2295(14 genes,8 taxa):Brassica rapaBra026991
ORTHOMCL2295(14 genes,8 taxa):Vitis viniferaGSVIVT01001292001
ORTHOMCL2295(14 genes,8 taxa):Oryza sativaOs03t0103000-01
ORTHOMCL2295(14 genes,8 taxa):Oryza sativaOs08t0155400-01
ORTHOMCL2295(14 genes,8 taxa):Oryza sativaOs10t0554200-01
ORTHOMCL2295(14 genes,8 taxa):Oryza sativaOs10t0554200-02
ORTHOMCL2295(14 genes,8 taxa):Populus trichocarpaPOPTR_0003s11080.1
ORTHOMCL2295(14 genes,8 taxa):Sorghum bicolorSb01g050410.1
ORTHOMCL2295(14 genes,8 taxa):Sorghum bicolorSb07g003690.1
ORTHOMCL2295(14 genes,8 taxa):Carica papayaevm.TU.supercontig_475.3
Tandem Duplication
ClusterGene Num.Gene List

The tandem genes of this gene was not detected with strict parameters, so there is no information collected in Bolbase.

Synteny Analysis
Synteny Genes
Compared to A.thaliana Compared to B.rapa
Synteny Regions
SpeciesRegionMapped SpeciesMapped RegionNum. of Genewise
B.oleraceaC08:38396062..38862121 (-)A.thalianaChr1:23009911..23497631 (+)21
SpeciesRegionMapped SpeciesMapped RegionNum. of Genewise
B.oleraceaC08:36906720..38791057 (+)B.rapaA09:2431805..3966665 (+)225
Trplicated Block
BlockBest HitStartENDChromosomeSubgenomeNum. of Gene Pairs on Block
AAT1G1211041052334109545Chr1Subgenome_I580
 
@2012 Department of Genomics and Molecular Biology, Oil Crops Research Institute.


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