Basic Information
Gene Model:Bol031302
Gene Family:Not classificated
Chromosome:C08
Scaffold:Scaffold000055
Sequence:
 | 
Gene Structure
Nucleotide Length:2883 bp
Transcript Length:1566 bp
Protein Length:521 aa
Strand:-
Location:C08: 39086493 : 39089375
Gene CDSs(4): 1-133 | 406-728 | 1353-1982 | 2404-2883 |
Protein Sequence Features
Interpro
DatabaseTermsIdentifierStartEndE-valueInterPro IDDescription
ProfileScanPS50850MFS 26 478 51.617Not foundNot found
superfamilySSF103473MFS general substrat 1 485 1.2e-61IPR016196Major facilitator superfamily, general substrate transporter
HMMTigrTIGR00879SP: MFS transporter, 1 485 2.9e-123IPR003663Sugar/inositol transporter
PatternScanPS00217SUGAR_TRANSPORT_2 142 167 NAIPR005829Sugar transporter, conserved site
PatternScanPS00216SUGAR_TRANSPORT_1 338 355 NAIPR005829Sugar transporter, conserved site
HMMPfamPF00083Sugar_tr 26 489 3.9e-197IPR005828General substrate transporter
HMMPantherPTHR11600:SF116MONOSACCHARIDE TRANS 9 348 2.4e-240Not foundNot found
HMMPantherPTHR11600SUGAR TRANSPORTER 9 348 2.4e-240Not foundNot found
Segsegseg 455 465 NANot foundNot found
Segsegseg 87 101 NANot foundNot found
Gene Ontology
GO TermGO TypeDescription
GO:0005215 Molecular Function transporter activity
GO:0006810 Biological Process transport
GO:0016020 Cellular Component membrane
GO:0016021 Cellular Component integral to membrane
GO:0022891 Molecular Function substrate-specific transmembrane transporter activity
GO:0055085 Biological Process transmembrane transport
Swiss-Prot
Best HitE_value Description
P235860.0STP1_ARATH Sugar transport protein 1 OS=Arabidopsis thaliana GN=STP1 PE=1 SV=2
TrEMBL
Best HitE_value Description
Q84N060.0Q84N06_DATGL Monosaccharide-H+ symporter OS=Datisca glomerata GN=ht1 PE=2 SV=1
KEGG
Best HitE_valueKOEC or Symbol Description
dha:DEHA2C11374g1e-55K08139HXTMFS transporter, SP family, sugar:H+ symporter
Gene Cluster
Orthologs
OrthoMCL GroupSpeciesGene List
ORTHOMCL55(90 genes,8 taxa):Arabidopsis thalianaAT1G11260.1
ORTHOMCL55(90 genes,8 taxa):Arabidopsis thalianaAT1G50310.1
ORTHOMCL55(90 genes,8 taxa):Arabidopsis thalianaAT3G19930.1
ORTHOMCL55(90 genes,8 taxa):Arabidopsis thalianaAT3G19940.1
ORTHOMCL55(90 genes,8 taxa):Arabidopsis thalianaAT4G02050.1
ORTHOMCL55(90 genes,8 taxa):Arabidopsis thalianaAT4G21480.1
ORTHOMCL55(90 genes,8 taxa):Arabidopsis thalianaAT5G23270.1
ORTHOMCL55(90 genes,8 taxa):Arabidopsis thalianaAT5G26340.1
ORTHOMCL55(90 genes,8 taxa):Brassica oleraceaBol000549
ORTHOMCL55(90 genes,8 taxa):Brassica oleraceaBol000550
ORTHOMCL55(90 genes,8 taxa):Brassica oleraceaBol010165
ORTHOMCL55(90 genes,8 taxa):Brassica oleraceaBol011395
ORTHOMCL55(90 genes,8 taxa):Brassica oleraceaBol012695
ORTHOMCL55(90 genes,8 taxa):Brassica oleraceaBol014014
ORTHOMCL55(90 genes,8 taxa):Brassica oleraceaBol014062
ORTHOMCL55(90 genes,8 taxa):Brassica oleraceaBol014063
ORTHOMCL55(90 genes,8 taxa):Brassica oleraceaBol014064
ORTHOMCL55(90 genes,8 taxa):Brassica oleraceaBol017091
ORTHOMCL55(90 genes,8 taxa):Brassica oleraceaBol018147
ORTHOMCL55(90 genes,8 taxa):Brassica oleraceaBol022294
ORTHOMCL55(90 genes,8 taxa):Brassica oleraceaBol026680
ORTHOMCL55(90 genes,8 taxa):Brassica oleraceaBol028422
ORTHOMCL55(90 genes,8 taxa):Brassica oleraceaBol030687
ORTHOMCL55(90 genes,8 taxa):Brassica oleraceaBol031302
ORTHOMCL55(90 genes,8 taxa):Brassica oleraceaBol032462
ORTHOMCL55(90 genes,8 taxa):Brassica oleraceaBol036657
ORTHOMCL55(90 genes,8 taxa):Brassica rapaBra000898
ORTHOMCL55(90 genes,8 taxa):Brassica rapaBra001766
ORTHOMCL55(90 genes,8 taxa):Brassica rapaBra013029
ORTHOMCL55(90 genes,8 taxa):Brassica rapaBra013529
ORTHOMCL55(90 genes,8 taxa):Brassica rapaBra018841
ORTHOMCL55(90 genes,8 taxa):Brassica rapaBra019870
ORTHOMCL55(90 genes,8 taxa):Brassica rapaBra022468
ORTHOMCL55(90 genes,8 taxa):Brassica rapaBra031762
ORTHOMCL55(90 genes,8 taxa):Brassica rapaBra036297
ORTHOMCL55(90 genes,8 taxa):Brassica rapaBra036575
ORTHOMCL55(90 genes,8 taxa):Brassica rapaBra037298
ORTHOMCL55(90 genes,8 taxa):Brassica rapaBra038242
ORTHOMCL55(90 genes,8 taxa):Brassica rapaBra038243
ORTHOMCL55(90 genes,8 taxa):Brassica rapaBra038244
ORTHOMCL55(90 genes,8 taxa):Brassica rapaBra038245
ORTHOMCL55(90 genes,8 taxa):Brassica rapaBra039642
ORTHOMCL55(90 genes,8 taxa):Vitis viniferaGSVIVT01001036001
ORTHOMCL55(90 genes,8 taxa):Vitis viniferaGSVIVT01003181001
ORTHOMCL55(90 genes,8 taxa):Vitis viniferaGSVIVT01017937001
ORTHOMCL55(90 genes,8 taxa):Vitis viniferaGSVIVT01031077001
ORTHOMCL55(90 genes,8 taxa):Vitis viniferaGSVIVT01036439001
ORTHOMCL55(90 genes,8 taxa):Vitis viniferaGSVIVT01036440001
ORTHOMCL55(90 genes,8 taxa):Oryza sativaOs01t0567500-01
ORTHOMCL55(90 genes,8 taxa):Oryza sativaOs01t0567600-00
ORTHOMCL55(90 genes,8 taxa):Oryza sativaOs03t0218400-01
ORTHOMCL55(90 genes,8 taxa):Oryza sativaOs03t0218400-02
ORTHOMCL55(90 genes,8 taxa):Oryza sativaOs03t0594400-01
ORTHOMCL55(90 genes,8 taxa):Oryza sativaOs07t0106200-01
ORTHOMCL55(90 genes,8 taxa):Oryza sativaOs07t0106200-02
ORTHOMCL55(90 genes,8 taxa):Oryza sativaOs07t0106200-03
ORTHOMCL55(90 genes,8 taxa):Oryza sativaOs07t0559700-00
ORTHOMCL55(90 genes,8 taxa):Oryza sativaOs08t0178200-01
ORTHOMCL55(90 genes,8 taxa):Oryza sativaOs08t0178200-02
ORTHOMCL55(90 genes,8 taxa):Oryza sativaOs09t0297300-00
ORTHOMCL55(90 genes,8 taxa):Oryza sativaOs09t0416200-01
ORTHOMCL55(90 genes,8 taxa):Populus trichocarpaPOPTR_0001s08750.1
ORTHOMCL55(90 genes,8 taxa):Populus trichocarpaPOPTR_0003s12130.1
ORTHOMCL55(90 genes,8 taxa):Populus trichocarpaPOPTR_0004s03360.1
ORTHOMCL55(90 genes,8 taxa):Populus trichocarpaPOPTR_0004s10150.1
ORTHOMCL55(90 genes,8 taxa):Populus trichocarpaPOPTR_0004s10160.1
ORTHOMCL55(90 genes,8 taxa):Populus trichocarpaPOPTR_0004s10910.1
ORTHOMCL55(90 genes,8 taxa):Populus trichocarpaPOPTR_0004s10910.2
ORTHOMCL55(90 genes,8 taxa):Populus trichocarpaPOPTR_0005s09290.1
ORTHOMCL55(90 genes,8 taxa):Populus trichocarpaPOPTR_0006s20340.1
ORTHOMCL55(90 genes,8 taxa):Populus trichocarpaPOPTR_0007s07530.1
ORTHOMCL55(90 genes,8 taxa):Populus trichocarpaPOPTR_0007s07540.1
ORTHOMCL55(90 genes,8 taxa):Populus trichocarpaPOPTR_0007s07550.1
ORTHOMCL55(90 genes,8 taxa):Populus trichocarpaPOPTR_0008s15050.1
ORTHOMCL55(90 genes,8 taxa):Populus trichocarpaPOPTR_0010s10010.1
ORTHOMCL55(90 genes,8 taxa):Populus trichocarpaPOPTR_0011s04170.1
ORTHOMCL55(90 genes,8 taxa):Populus trichocarpaPOPTR_0018s12130.1
ORTHOMCL55(90 genes,8 taxa):Sorghum bicolorSb01g016730.1
ORTHOMCL55(90 genes,8 taxa):Sorghum bicolorSb01g042690.1
ORTHOMCL55(90 genes,8 taxa):Sorghum bicolorSb02g000650.1
ORTHOMCL55(90 genes,8 taxa):Sorghum bicolorSb02g024690.1
ORTHOMCL55(90 genes,8 taxa):Sorghum bicolorSb02g036310.1
ORTHOMCL55(90 genes,8 taxa):Sorghum bicolorSb03g025600.1
ORTHOMCL55(90 genes,8 taxa):Sorghum bicolorSb04g036140.1
ORTHOMCL55(90 genes,8 taxa):Sorghum bicolorSb07g004950.1
ORTHOMCL55(90 genes,8 taxa):Carica papayaevm.TU.contig_33460.1
ORTHOMCL55(90 genes,8 taxa):Carica papayaevm.TU.supercontig_36.200
ORTHOMCL55(90 genes,8 taxa):Carica papayaevm.TU.supercontig_488.2
ORTHOMCL55(90 genes,8 taxa):Carica papayaevm.TU.supercontig_508.6
ORTHOMCL55(90 genes,8 taxa):Carica papayaevm.TU.supercontig_80.72
Tandem Duplication
ClusterGene Num.Gene List

The tandem genes of this gene was not detected with strict parameters, so there is no information collected in Bolbase.

Synteny Analysis
Synteny Genes
Compared to A.thaliana Compared to B.rapa
Synteny Regions
SpeciesRegionMapped SpeciesMapped RegionNum. of Genewise
B.oleraceaC08:36203949..39772111 (-)A.thalianaChr1:3009941..6730931 (+)399
SpeciesRegionMapped SpeciesMapped RegionNum. of Genewise
B.oleraceaC08:38818391..39098816 (+)B.rapaA09:2240419..2425958 (-)30
Trplicated Block
BlockBest HitStartENDChromosomeSubgenomeNum. of Gene Pairs on Block
AAT1G1126037773283780337Chr1Subgenome_I580
 
@2012 Department of Genomics and Molecular Biology, Oil Crops Research Institute.


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