Basic Information
Gene Model:Bol031301
Gene Family:Not classificated
Chromosome:C08
Scaffold:Scaffold000055
Sequence:
 | 
Gene Structure
Nucleotide Length:981 bp
Transcript Length:897 bp
Protein Length:298 aa
Strand:-
Location:C08: 39094243 : 39095223
Gene CDSs(2): 1-464 | 549-981 |
Protein Sequence Features
Interpro
DatabaseTermsIdentifierStartEndE-valueInterPro IDDescription
Coilcoilcoiled-coil 79 107 NANot foundNot found
Coilcoilcoiled-coil 35 56 NANot foundNot found
ProfileScanPS50192T_SNARE 198 260 17.570IPR000727Target SNARE coiled-coil region
superfamilySSF47661t-snare proteins 25 233 3.6e-48IPR010989t-SNARE
PatternScanPS00914SYNTAXIN 204 243 NAIPR006012Syntaxin/epimorphin, conserved site
HMMPfamPF00804Syntaxin 27 134 1.5e-30IPR006011Syntaxin, N-terminal
HMMPfamPF05739SNARE 203 265 1.4e-22IPR000727Target SNARE coiled-coil region
HMMSmartSM00397no description 193 260 8.4e-17IPR000727Target SNARE coiled-coil region
HMMSmartSM00503no description 23 149 2.9e-45IPR006011Syntaxin, N-terminal
HMMPantherPTHR19957SYNTAXIN 17 228 1.5e-118Not foundNot found
HMMPantherPTHR19957:SF26SYNTAXIN, ARABIDOPSI 17 228 1.5e-118Not foundNot found
Gene3DG3DSA:1.20.1050.30no description 27 253 1.9e-50Not foundNot found
Segsegseg 112 125 NANot foundNot found
Segsegseg 274 291 NANot foundNot found
Gene Ontology
GO TermGO TypeDescription
GO:0005484 Molecular Function SNAP receptor activity
GO:0005515 Molecular Function protein binding
GO:0006886 Biological Process intracellular protein transport
GO:0016020 Cellular Component membrane
GO:0016192 Biological Process vesicle-mediated transport
Swiss-Prot
Best HitE_value Description
O647911e-161SY124_ARATH Syntaxin-124 OS=Arabidopsis thaliana GN=SYP124 PE=2 SV=1
TrEMBL
Best HitE_value Description
A0MED71e-160A0MED7_ARATH Putative uncharacterized protein (Fragment) OS=Arabidopsis thaliana PE=2 SV=1
KEGG
Best HitE_valueKOEC or Symbol Description
ath:AT1G612901e-161K08486STX1B_2_3syntaxin 1B/2/3
Gene Cluster
Orthologs
OrthoMCL GroupSpeciesGene List
ORTHOMCL3605(12 genes,8 taxa):Arabidopsis thalianaAT1G61290.1
ORTHOMCL3605(12 genes,8 taxa):Brassica oleraceaBol001988
ORTHOMCL3605(12 genes,8 taxa):Brassica oleraceaBol031301
ORTHOMCL3605(12 genes,8 taxa):Brassica rapaBra016846
ORTHOMCL3605(12 genes,8 taxa):Brassica rapaBra019872
ORTHOMCL3605(12 genes,8 taxa):Brassica rapaBra031759
ORTHOMCL3605(12 genes,8 taxa):Vitis viniferaGSVIVT01006716001
ORTHOMCL3605(12 genes,8 taxa):Oryza sativaOs06t0590500-01
ORTHOMCL3605(12 genes,8 taxa):Populus trichocarpaPOPTR_0004s03540.1
ORTHOMCL3605(12 genes,8 taxa):Populus trichocarpaPOPTR_0011s04350.1
ORTHOMCL3605(12 genes,8 taxa):Sorghum bicolorSb10g022930.1
ORTHOMCL3605(12 genes,8 taxa):Carica papayaevm.TU.supercontig_27.114
Tandem Duplication
ClusterGene Num.Gene List

The tandem genes of this gene was not detected with strict parameters, so there is no information collected in Bolbase.

Synteny Analysis
Synteny Genes
Compared to A.thaliana Compared to B.rapa
Synteny Regions
SpeciesRegionMapped SpeciesMapped RegionNum. of Genewise
B.oleraceaC08:36203949..39772111 (-)A.thalianaChr1:3009941..6730931 (+)399
SpeciesRegionMapped SpeciesMapped RegionNum. of Genewise
B.oleraceaC08:38818391..39098816 (+)B.rapaA09:2240419..2425958 (-)30
Trplicated Block
BlockBest HitStartENDChromosomeSubgenomeNum. of Gene Pairs on Block
AAT1G1125037687243769706Chr1Subgenome_I580
 
@2012 Department of Genomics and Molecular Biology, Oil Crops Research Institute.


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