Basic Information
Gene Model:Bol031235
Gene Family:Not classificated
Chromosome:C08
Scaffold:Scaffold000055
Sequence:
 | 
Gene Structure
Nucleotide Length:11410 bp
Transcript Length:2979 bp
Protein Length:992 aa
Strand:-
Location:C08: 39461971 : 39473380
Gene CDSs(33): 1-33 | 208-258 | 355-388 | 1318-1454 | 1858-1932 | 2083-2128 | 2514-2573 | 2675-2755 | 2972-3057 | 3288-3389 | 3598-3651 | 3909-4010 | 4735-4793 | 5078-5222 | 5576-5683 | 6086-6238 | 6466-6570 | 6830-7026 | 7182-7290 | 7391-7489 | 7570-7715 | 8390-8447 | 8632-8724 | 9112-9162 | 9363-9494 | 9622-9723 | 9948-10002 | 10162-10247 | 10428-10576 | 10775-10880 | 10969-11022 | 11194-11239 | 11346-11410 |
Protein Sequence Features
Interpro
DatabaseTermsIdentifierStartEndE-valueInterPro IDDescription
PatternScanPS00154ATPASE_E1_E2 341 347 NAIPR018303ATPase, P-type phosphorylation site
superfamilySSF81653Calcium ATPase, tran 116 230 2.4e-29Not foundNot found
superfamilySSF56784HAD-like 335 733 1.1e-44Not foundNot found
superfamilySSF81660Metal cation-transpo 346 582 1.2e-56Not foundNot found
superfamilySSF81665Calcium ATPase, tran 1 971 8.9e-129Not foundNot found
HMMTigrTIGR01494ATPase_P-type: ATPas 658 775 1.6e-44IPR001757ATPase, P-type, K/Mg/Cd/Cu/Zn/Na/Ca/Na/H-transporter
HMMTigrTIGR01494ATPase_P-type: ATPas 86 189 6.5e-17IPR001757ATPase, P-type, K/Mg/Cd/Cu/Zn/Na/Ca/Na/H-transporter
HMMTigrTIGR01494ATPase_P-type: ATPas 238 365 1.3e-27IPR001757ATPase, P-type, K/Mg/Cd/Cu/Zn/Na/Ca/Na/H-transporter
HMMTigrTIGR01116ATPase-IIA1_Ca: calc 47 969 0IPR005782ATPase, P-type, calcium-transporting
Segsegseg 86 100 NANot foundNot found
Segsegseg 205 218 NANot foundNot found
Gene3DG3DSA:1.20.1110.10no description 658 974 1.5e-98Not foundNot found
Gene3DG3DSA:2.70.150.10no description 1 210 4.7e-39Not foundNot found
Gene3DG3DSA:3.40.1110.10no description 349 585 9.8e-58Not foundNot found
HMMPfamPF00689Cation_ATPase_C 767 967 1.3e-54IPR006068ATPase, P-type cation-transporter, C-terminal
HMMPfamPF00702Hydrolase 573 707 1e-17IPR005834Haloacid dehalogenase-like hydrolase
HMMPfamPF00122E1-E2_ATPase 86 331 1.2e-75IPR008250ATPase, P-type, ATPase-associated region
HMMPfamPF00690Cation_ATPase_N 3 71 2.4e-19IPR004014ATPase, P-type cation-transporter, N-terminal
HMMSmartSM00831no description 3 71 2.7e-07IPR004014ATPase, P-type cation-transporter, N-terminal
HMMPantherPTHR11939:SF92CATION-TRANSPORTING 2 809 0Not foundNot found
HMMPantherPTHR11939CATION-TRANSPORTING 2 809 0IPR001757ATPase, P-type, K/Mg/Cd/Cu/Zn/Na/Ca/Na/H-transporter
Coilcoilcoiled-coil 105 126 NANot foundNot found
Gene Ontology
GO TermGO TypeDescription
GO:0003824 Molecular Function catalytic activity
GO:0005388 Molecular Function calcium-transporting ATPase activity
GO:0005524 Molecular Function ATP binding
GO:0006754 Biological Process ATP biosynthetic process
GO:0006812 Biological Process cation transport
GO:0006816 Biological Process calcium ion transport
GO:0008152 Biological Process metabolic process
GO:0015662 Molecular Function ATPase activity, coupled to transmembrane movement of ions, phosphorylative mechanism
GO:0016020 Cellular Component membrane
GO:0016021 Cellular Component integral to membrane
GO:0016820 Molecular Function hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances
Swiss-Prot
Best HitE_value Description
Q9SY550.0ECA3_ARATH Calcium-transporting ATPase 3, endoplasmic reticulum-type OS=Arabidopsis thaliana GN=ECA3 PE=2 SV=3
TrEMBL
Best HitE_value Description
A7NUA60.0A7NUA6_VITVI Chromosome chr18 scaffold_1, whole genome shotgun sequence OS=Vitis vinifera GN=GSVIVT00014975001 PE=3 SV=1
KEGG
Best HitE_valueKOEC or Symbol Description
ath:AT1G101300.0K01537E3.6.3.8Ca2+-transporting ATPase
Gene Cluster
Orthologs
OrthoMCL GroupSpeciesGene List
ORTHOMCL280(35 genes,8 taxa):Arabidopsis thalianaAT1G07670.1
ORTHOMCL280(35 genes,8 taxa):Arabidopsis thalianaAT1G07810.1
ORTHOMCL280(35 genes,8 taxa):Arabidopsis thalianaAT1G10130.1
ORTHOMCL280(35 genes,8 taxa):Arabidopsis thalianaAT4G00900.1
ORTHOMCL280(35 genes,8 taxa):Brassica oleraceaBol004102
ORTHOMCL280(35 genes,8 taxa):Brassica oleraceaBol006517
ORTHOMCL280(35 genes,8 taxa):Brassica oleraceaBol007671
ORTHOMCL280(35 genes,8 taxa):Brassica oleraceaBol011452
ORTHOMCL280(35 genes,8 taxa):Brassica oleraceaBol031235
ORTHOMCL280(35 genes,8 taxa):Brassica oleraceaBol036766
ORTHOMCL280(35 genes,8 taxa):Brassica oleraceaBol041160
ORTHOMCL280(35 genes,8 taxa):Brassica rapaBra019960
ORTHOMCL280(35 genes,8 taxa):Brassica rapaBra029645
ORTHOMCL280(35 genes,8 taxa):Brassica rapaBra031583
ORTHOMCL280(35 genes,8 taxa):Brassica rapaBra031593
ORTHOMCL280(35 genes,8 taxa):Brassica rapaBra031701
ORTHOMCL280(35 genes,8 taxa):Brassica rapaBra037404
ORTHOMCL280(35 genes,8 taxa):Vitis viniferaGSVIVT01009320001
ORTHOMCL280(35 genes,8 taxa):Vitis viniferaGSVIVT01025062001
ORTHOMCL280(35 genes,8 taxa):Vitis viniferaGSVIVT01025583001
ORTHOMCL280(35 genes,8 taxa):Vitis viniferaGSVIVT01027195001
ORTHOMCL280(35 genes,8 taxa):Oryza sativaOs03t0281600-01
ORTHOMCL280(35 genes,8 taxa):Oryza sativaOs03t0281600-02
ORTHOMCL280(35 genes,8 taxa):Oryza sativaOs03t0730800-01
ORTHOMCL280(35 genes,8 taxa):Populus trichocarpaPOPTR_0001s23990.1
ORTHOMCL280(35 genes,8 taxa):Populus trichocarpaPOPTR_0002s11820.1
ORTHOMCL280(35 genes,8 taxa):Populus trichocarpaPOPTR_0009s03070.1
ORTHOMCL280(35 genes,8 taxa):Populus trichocarpaPOPTR_0014s01500.1
ORTHOMCL280(35 genes,8 taxa):Populus trichocarpaPOPTR_0014s09740.1
ORTHOMCL280(35 genes,8 taxa):Sorghum bicolorSb01g009225.1
ORTHOMCL280(35 genes,8 taxa):Sorghum bicolorSb01g038990.1
ORTHOMCL280(35 genes,8 taxa):Sorghum bicolorSb09g001850.1
ORTHOMCL280(35 genes,8 taxa):Carica papayaevm.TU.supercontig_114.16
ORTHOMCL280(35 genes,8 taxa):Carica papayaevm.TU.supercontig_139.2
ORTHOMCL280(35 genes,8 taxa):Carica papayaevm.TU.supercontig_142.46
Tandem Duplication
ClusterGene Num.Gene List

The tandem genes of this gene was not detected with strict parameters, so there is no information collected in Bolbase.

Synteny Analysis
Synteny Genes
Compared to A.thaliana Compared to B.rapa
Synteny Regions
SpeciesRegionMapped SpeciesMapped RegionNum. of Genewise
B.oleraceaC08:36203949..39772111 (-)A.thalianaChr1:3009941..6730931 (+)399
SpeciesRegionMapped SpeciesMapped RegionNum. of Genewise
B.oleraceaC08:39238707..40235174 (+)B.rapaA09:1347830..2092640 (-)116
Trplicated Block
BlockBest HitStartENDChromosomeSubgenomeNum. of Gene Pairs on Block
AAT1G1013033109303322213Chr1Subgenome_I580
 
@2012 Department of Genomics and Molecular Biology, Oil Crops Research Institute.


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