Basic Information
Gene Model:Bol031220
Gene Family:Protein Kinase Gene Families
Chromosome:C02
Scaffold:Scaffold000056
Sequence:
 | 
Gene Structure
Nucleotide Length:1074 bp
Transcript Length:1074 bp
Protein Length:357 aa
Strand:+
Location:C02: 39285360 : 39286433
Gene CDSs(1): 1-1074 |
Protein Sequence Features
Interpro
DatabaseTermsIdentifierStartEndE-valueInterPro IDDescription
Gene3DG3DSA:3.30.200.20no description 43 136 2.5e-12Not foundNot found
Gene3DG3DSA:1.10.510.10no description 139 340 5.1e-34Not foundNot found
ProfileScanPS50011PROTEIN_KINASE_DOM 62 341 25.785IPR000719Protein kinase, catalytic domain
HMMPantherPTHR23258SERINE-THREONINE PRO 1 237 1.6e-142Not foundNot found
HMMPantherPTHR23258:SF477RECEPTOR-LIKE PROTEI 1 237 1.6e-142Not foundNot found
HMMSmartSM00220no description 62 332 1.2e-06IPR002290Serine/threonine-protein kinase domain
HMMSmartSM00219no description 68 329 1.7e-07IPR020635Tyrosine-protein kinase, subgroup, catalytic domain
HMMPfamPF07714Pkinase_Tyr 68 329 5.3e-11IPR001245Tyrosine-protein kinase, catalytic domain
superfamilySSF56112Protein kinase-like 32 329 4.6e-58IPR011009Protein kinase-like domain
Gene Ontology
GO TermGO TypeDescription
GO:0004672 Molecular Function protein kinase activity
GO:0004674 Molecular Function protein serine/threonine kinase activity
GO:0004713 Molecular Function protein tyrosine kinase activity
GO:0005524 Molecular Function ATP binding
GO:0006468 Biological Process protein phosphorylation
Swiss-Prot
Best HitE_value Description
O045671e-123Y1719_ARATH Probable inactive receptor kinase At1g27190 OS=Arabidopsis thaliana GN=At1g27190 PE=1 SV=1
TrEMBL
Best HitE_value Description
Q9LSI91e-179Q9LSI9_ARATH Leucine-rich repeat receptor-like protein kinase OS=Arabidopsis thaliana GN=LRR-RLK PE=2 SV=1
KEGG
Best HitE_valueKOEC or Symbol Description
vvi:1002526476e-57K13415BRI1--
Gene Cluster
Orthologs
OrthoMCL GroupSpeciesGene List
ORTHOMCL1259(18 genes,7 taxa):Arabidopsis thalianaAT1G27190.1
ORTHOMCL1259(18 genes,7 taxa):Arabidopsis thalianaAT1G69990.1
ORTHOMCL1259(18 genes,7 taxa):Arabidopsis thalianaAT3G28450.1
ORTHOMCL1259(18 genes,7 taxa):Brassica oleraceaBol000708
ORTHOMCL1259(18 genes,7 taxa):Brassica oleraceaBol031220
ORTHOMCL1259(18 genes,7 taxa):Brassica oleraceaBol032964
ORTHOMCL1259(18 genes,7 taxa):Brassica oleraceaBol042964
ORTHOMCL1259(18 genes,7 taxa):Brassica rapaBra016244
ORTHOMCL1259(18 genes,7 taxa):Brassica rapaBra024650
ORTHOMCL1259(18 genes,7 taxa):Brassica rapaBra025334
ORTHOMCL1259(18 genes,7 taxa):Brassica rapaBra033046
ORTHOMCL1259(18 genes,7 taxa):Oryza sativaOs04t0487200-01
ORTHOMCL1259(18 genes,7 taxa):Populus trichocarpaPOPTR_0001s34850.1
ORTHOMCL1259(18 genes,7 taxa):Populus trichocarpaPOPTR_0004s07980.1
ORTHOMCL1259(18 genes,7 taxa):Populus trichocarpaPOPTR_0017s02110.1
ORTHOMCL1259(18 genes,7 taxa):Populus trichocarpaPOPTR_0017s11080.1
ORTHOMCL1259(18 genes,7 taxa):Sorghum bicolorSb06g020750.1
ORTHOMCL1259(18 genes,7 taxa):Carica papayaevm.TU.supercontig_5.307
Tandem Duplication
ClusterGene Num.Gene List

The tandem genes of this gene was not detected with strict parameters, so there is no information collected in Bolbase.

Synteny Analysis
Synteny Genes
Compared to A.thaliana Compared to B.rapa
Synteny Regions
SpeciesRegionMapped SpeciesMapped RegionNum. of Genewise
B.oleraceaC02:38189138..39624344 (-)A.thalianaChr5:15895729..16532879 (+)34
SpeciesRegionMapped SpeciesMapped RegionNum. of Genewise
B.oleraceaC02:38362268..39458514 (+)B.rapaA09:6427668..6753438 (-)29
Trplicated Block
BlockBest HitStartENDChromosomeSubgenomeNum. of Gene Pairs on Block
LAT3G284501066726210669377Chr3Subgenome_I135
 
@2012 Department of Genomics and Molecular Biology, Oil Crops Research Institute.


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