Basic Information
Gene Model:Bol031208
Gene Family:Not classificated
Chromosome:C02
Scaffold:Scaffold000056
Sequence:
 | 
Gene Structure
Nucleotide Length:1037 bp
Transcript Length:699 bp
Protein Length:232 aa
Strand:+
Location:C02: 39158518 : 39159554
Gene CDSs(4): 1-246 | 414-575 | 661-809 | 896-1037 |
Protein Sequence Features
Interpro
DatabaseTermsIdentifierStartEndE-valueInterPro IDDescription
superfamilySSF103481Multidrug resistance 99 209 3.2e-08Not foundNot found
Gene Ontology
GO TermGO TypeDescription

Note: this gene was not detected its best hit in Swiss-Prot database.

Swiss-Prot
Best HitE_value Description
Q6J1633e-215NG4_PINTA Auxin-induced protein 5NG4 OS=Pinus taeda PE=2 SV=1
TrEMBL
Best HitE_value Description
Q8VYZ71e-102Q8VYZ7_ARATH Putative uncharacterized protein At3g28070 OS=Arabidopsis thaliana GN=At3g28070 PE=2 SV=1
KEGG
Best HitE_valueKOEC or Symbol Description

Note: this gene was not detected its best hit in KEGG database.

Gene Cluster
Orthologs
OrthoMCL GroupSpeciesGene List

Note: the orthologous genes of this gene was not detected by OrthoMCL software with default parameters.

Tandem Duplication
ClusterGene Num.Gene List
Cluster_11552Bol031206 Bol031208 
Synteny Analysis
Synteny Genes
Compared to A.thaliana Compared to B.rapa
Synteny Regions
SpeciesRegionMapped SpeciesMapped RegionNum. of Genewise
B.oleraceaC02:38189138..39624344 (-)A.thalianaChr5:15895729..16532879 (+)34
SpeciesRegionMapped SpeciesMapped RegionNum. of Genewise
B.oleraceaC02:38362268..39458514 (+)B.rapaA09:6427668..6753438 (-)29
Trplicated Block
BlockBest HitStartENDChromosomeSubgenomeNum. of Gene Pairs on Block
LAT3G280701044792210451022Chr3Subgenome_I135
 
@2012 Department of Genomics and Molecular Biology, Oil Crops Research Institute.


logo