Basic Information
Gene Model:Bol031206
Gene Family:Not classificated
Chromosome:C02
Scaffold:Scaffold000056
Sequence:
 | 
Gene Structure
Nucleotide Length:2558 bp
Transcript Length:1104 bp
Protein Length:367 aa
Strand:+
Location:C02: 39139373 : 39141930
Gene CDSs(7): 1-191 | 306-371 | 1170-1283 | 1416-1644 | 1760-1921 | 2004-2155 | 2369-2558 |
Protein Sequence Features
Interpro
DatabaseTermsIdentifierStartEndE-valueInterPro IDDescription
superfamilySSF103481Multidrug resistance 46 157 4.2e-08Not foundNot found
superfamilySSF103481Multidrug resistance 224 328 1.8e-08Not foundNot found
Segsegseg 50 62 NANot foundNot found
Segsegseg 331 345 NANot foundNot found
HMMPfamPF00892DUF6 43 154 6.2e-06IPR000620Protein of unknown function DUF6, transmembrane
Gene Ontology
GO TermGO TypeDescription
GO:0016020 Cellular Component membrane
Swiss-Prot
Best HitE_value Description
Q6J1635e-375NG4_PINTA Auxin-induced protein 5NG4 OS=Pinus taeda PE=2 SV=1
TrEMBL
Best HitE_value Description
Q94JU20.0Q94JU2_ARATH AT3g28050/MMG15_6 OS=Arabidopsis thaliana GN=At3g28050 PE=2 SV=1
KEGG
Best HitE_valueKOEC or Symbol Description

Note: this gene was not detected its best hit in KEGG database.

Gene Cluster
Orthologs
OrthoMCL GroupSpeciesGene List
ORTHOMCL9913(8 genes,6 taxa):Arabidopsis thalianaAT3G28050.1
ORTHOMCL9913(8 genes,6 taxa):Brassica oleraceaBol031206
ORTHOMCL9913(8 genes,6 taxa):Brassica oleraceaBol032238
ORTHOMCL9913(8 genes,6 taxa):Brassica rapaBra033035
ORTHOMCL9913(8 genes,6 taxa):Brassica rapaBra039062
ORTHOMCL9913(8 genes,6 taxa):Vitis viniferaGSVIVT01032511001
ORTHOMCL9913(8 genes,6 taxa):Populus trichocarpaPOPTR_0001s36190.1
ORTHOMCL9913(8 genes,6 taxa):Carica papayaevm.TU.supercontig_286.2
Tandem Duplication
ClusterGene Num.Gene List
Cluster_11552Bol031206 Bol031208 
Synteny Analysis
Synteny Genes
Compared to A.thaliana Compared to B.rapa
Synteny Regions
SpeciesRegionMapped SpeciesMapped RegionNum. of Genewise
B.oleraceaC02:38189138..39624344 (-)A.thalianaChr5:15895729..16532879 (+)34
SpeciesRegionMapped SpeciesMapped RegionNum. of Genewise
B.oleraceaC02:38362268..39458514 (+)B.rapaA09:6427668..6753438 (-)29
Trplicated Block
BlockBest HitStartENDChromosomeSubgenomeNum. of Gene Pairs on Block
LAT3G280501044281410445398Chr3Subgenome_I135
 
@2012 Department of Genomics and Molecular Biology, Oil Crops Research Institute.


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