Basic Information
Gene Model:Bol031186
Gene Family:ARIADNE Gene Families
Gene Structure
Nucleotide Length:1584 bp
Transcript Length:1584 bp
Protein Length:527 aa
Location:C02: 38963493 : 38965076
Gene CDSs(1): 1-1584 |
Protein Sequence Features
DatabaseTermsIdentifierStartEndE-valueInterPro IDDescription
HMMSmartSM00647no description 262 327 0.15IPR002867Zinc finger, C6HC-type
HMMSmartSM00647no description 192 254 1.2e-23IPR002867Zinc finger, C6HC-type
HMMPfamPF01485IBR 282 312 0.00058IPR002867Zinc finger, C6HC-type
HMMPfamPF01485IBR 192 254 1.9e-25IPR002867Zinc finger, C6HC-type
HMMPantherPTHR11685ARIADNE RING ZINC FI 81 525 7.6e-259Not foundNot found
HMMPantherPTHR11685:SF12RING ZINC FINGER PRO 81 525 7.6e-259Not foundNot found
PatternScanPS00518ZF_RING_1 236 245 NAIPR017907Zinc finger, RING-type, conserved site
superfamilySSF57850RING/U-box 110 194 2.2e-08Not foundNot found
superfamilySSF57850RING/U-box 273 329 4.4e-12Not foundNot found
ProfileScanPS50089ZF_RING_2 123 172 9.701IPR001841Zinc finger, RING-type
Segsegseg 1 19 NANot foundNot found
Gene Ontology
GO TermGO TypeDescription
GO:0005515 Molecular Function protein binding
GO:0008270 Molecular Function zinc ion binding
Best HitE_value Description
Q9LVW90.0ARI4_ARATH Putative E3 ubiquitin-protein ligase ARI4 OS=Arabidopsis thaliana GN=ARI4 PE=5 SV=2
Best HitE_value Description
A7P9591e-173A7P959_VITVI Chromosome chr3 scaffold_8, whole genome shotgun sequence OS=Vitis vinifera GN=GSVIVT00036439001 PE=4 SV=1
Best HitE_valueKOEC or Symbol Description
Gene Cluster
OrthoMCL GroupSpeciesGene List
ORTHOMCL1287(18 genes,8 taxa):Arabidopsis thalianaAT2G16090.1
ORTHOMCL1287(18 genes,8 taxa):Arabidopsis thalianaAT3G27710.1
ORTHOMCL1287(18 genes,8 taxa):Arabidopsis thalianaAT3G27720.1
ORTHOMCL1287(18 genes,8 taxa):Arabidopsis thalianaAT4G34370.1
ORTHOMCL1287(18 genes,8 taxa):Brassica oleraceaBol013659
ORTHOMCL1287(18 genes,8 taxa):Brassica oleraceaBol031186
ORTHOMCL1287(18 genes,8 taxa):Brassica oleraceaBol031869
ORTHOMCL1287(18 genes,8 taxa):Brassica oleraceaBol032231
ORTHOMCL1287(18 genes,8 taxa):Brassica rapaBra001960
ORTHOMCL1287(18 genes,8 taxa):Brassica rapaBra011524
ORTHOMCL1287(18 genes,8 taxa):Brassica rapaBra033024
ORTHOMCL1287(18 genes,8 taxa):Brassica rapaBra039068
ORTHOMCL1287(18 genes,8 taxa):Vitis viniferaGSVIVT01009627001
ORTHOMCL1287(18 genes,8 taxa):Vitis viniferaGSVIVT01031904001
ORTHOMCL1287(18 genes,8 taxa):Oryza sativaOs03t0233500-01
ORTHOMCL1287(18 genes,8 taxa):Populus trichocarpaPOPTR_0009s11430.1
ORTHOMCL1287(18 genes,8 taxa):Sorghum bicolorSb01g042240.1
ORTHOMCL1287(18 genes,8 taxa):Carica papayaevm.TU.supercontig_62.99
Tandem Duplication
ClusterGene Num.Gene List

The tandem genes of this gene was not detected with strict parameters, so there is no information collected in Bolbase.

Synteny Analysis
Synteny Genes
Compared to A.thaliana Compared to B.rapa
Synteny Regions
SpeciesRegionMapped SpeciesMapped RegionNum. of Genewise
B.oleraceaC02:38189138..39624344 (-)A.thalianaChr5:15895729..16532879 (+)34
SpeciesRegionMapped SpeciesMapped RegionNum. of Genewise
B.oleraceaC02:38362268..39458514 (+)B.rapaA09:6427668..6753438 (-)29
Trplicated Block
BlockBest HitStartENDChromosomeSubgenomeNum. of Gene Pairs on Block
@2012 Department of Genomics and Molecular Biology, Oil Crops Research Institute.