Basic Information
Gene Model:Bol031115
Gene Family:Transcription Factor Families
Chromosome:C02
Scaffold:Scaffold000056
Sequence:
 | 
Gene Structure
Nucleotide Length:1870 bp
Transcript Length:927 bp
Protein Length:308 aa
Strand:-
Location:C02: 38234301 : 38236170
Gene CDSs(6): 1-360 | 447-523 | 641-687 | 1117-1217 | 1291-1380 | 1619-1870 |
Protein Sequence Features
Interpro
DatabaseTermsIdentifierStartEndE-valueInterPro IDDescription
HMMPfamPF02362B3 94 178 8.8e-30IPR003340Transcriptional factor B3
Gene3DG3DSA:2.40.330.10no description 82 210 3.2e-30Not foundNot found
ProfileScanPS50863B3 95 197 9.855IPR003340Transcriptional factor B3
Segsegseg 252 258 NANot foundNot found
Segsegseg 49 75 NANot foundNot found
Segsegseg 198 207 NANot foundNot found
Gene Ontology
GO TermGO TypeDescription
GO:0003677 Molecular Function DNA binding
GO:0006355 Biological Process regulation of transcription, DNA-dependent
Swiss-Prot
Best HitE_value Description
Q9LW311e-130FUS3_ARATH B3 domain-containing transcription factor FUS3 OS=Arabidopsis thaliana GN=FUS3 PE=2 SV=2
TrEMBL
Best HitE_value Description
B9GFH62e-75B9GFH6_POPTR Predicted protein OS=Populus trichocarpa GN=POPTRDRAFT_1069320 PE=4 SV=1
KEGG
Best HitE_valueKOEC or Symbol Description
zma:1002847382e-10K09287RAVRAV-like factor
Gene Cluster
Orthologs
OrthoMCL GroupSpeciesGene List
ORTHOMCL7956(9 genes,8 taxa):Arabidopsis thalianaAT3G26790.1
ORTHOMCL7956(9 genes,8 taxa):Brassica oleraceaBol031115
ORTHOMCL7956(9 genes,8 taxa):Brassica rapaBra032953
ORTHOMCL7956(9 genes,8 taxa):Vitis viniferaGSVIVT01033007001
ORTHOMCL7956(9 genes,8 taxa):Oryza sativaOs01t0713600-01
ORTHOMCL7956(9 genes,8 taxa):Populus trichocarpaPOPTR_0001s32990.1
ORTHOMCL7956(9 genes,8 taxa):Populus trichocarpaPOPTR_0017s08820.1
ORTHOMCL7956(9 genes,8 taxa):Sorghum bicolorSb03g032730.1
ORTHOMCL7956(9 genes,8 taxa):Carica papayaevm.TU.supercontig_70.86
Tandem Duplication
ClusterGene Num.Gene List

The tandem genes of this gene was not detected with strict parameters, so there is no information collected in Bolbase.

Synteny Analysis
Synteny Genes
Compared to A.thaliana Compared to B.rapa
Synteny Regions
SpeciesRegionMapped SpeciesMapped RegionNum. of Genewise
B.oleraceaC02:38189138..39624344 (-)A.thalianaChr5:15895729..16532879 (+)34
SpeciesRegionMapped SpeciesMapped RegionNum. of Genewise
B.oleraceaC02:38083350..38953030 (+)B.rapaA07:10622154..10879776 (-)11
Trplicated Block
BlockBest HitStartENDChromosomeSubgenomeNum. of Gene Pairs on Block
LAT3G2679098538289855989Chr3Subgenome_I135
 
@2012 Department of Genomics and Molecular Biology, Oil Crops Research Institute.


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