Basic Information
Gene Model:Bol031048
Gene Family:Transcription Factor Families
Chromosome:C02
Scaffold:Scaffold000056
Sequence:
 | 
Gene Structure
Nucleotide Length:1050 bp
Transcript Length:1050 bp
Protein Length:349 aa
Strand:+
Location:C02: 37295634 : 37296683
Gene CDSs(1): 1-1050 |
Protein Sequence Features
Interpro
DatabaseTermsIdentifierStartEndE-valueInterPro IDDescription
superfamilySSF54171DNA-binding domain 65 124 2e-19IPR016177DNA-binding, integrase-type
ProfileScanPS51032AP2_ERF 66 121 19.770IPR001471Pathogenesis-related transcriptional factor/ERF, DNA-binding
ProfileScanPS50863B3 195 299 13.874IPR003340Transcriptional factor B3
Segsegseg 19 37 NANot foundNot found
Segsegseg 4 16 NANot foundNot found
HMMSmartSM00380no description 66 127 1.5e-27IPR001471Pathogenesis-related transcriptional factor/ERF, DNA-binding
HMMPfamPF02362B3 194 302 2.8e-34IPR003340Transcriptional factor B3
HMMPfamPF00847AP2 65 114 4.1e-14IPR001471Pathogenesis-related transcriptional factor/ERF, DNA-binding
Gene3DG3DSA:2.40.330.10no description 182 312 1.6e-36Not foundNot found
Gene3DG3DSA:3.30.730.10no description 65 124 2.7e-16IPR001471Pathogenesis-related transcriptional factor/ERF, DNA-binding
Gene Ontology
GO TermGO TypeDescription
GO:0003677 Molecular Function DNA binding
GO:0003700 Molecular Function sequence-specific DNA binding transcription factor activity
GO:0006355 Biological Process regulation of transcription, DNA-dependent
Swiss-Prot
Best HitE_value Description
Q9LS061e-138RAVL4_ARATH AP2/ERF and B3 domain-containing transcription factor ARF14 OS=Arabidopsis thaliana GN=ARF14 PE=2 SV=1
TrEMBL
Best HitE_value Description
B9SEJ01e-110B9SEJ0_RICCO DNA-binding protein RAV1, putative OS=Ricinus communis GN=RCOM_0705620 PE=4 SV=1
KEGG
Best HitE_valueKOEC or Symbol Description
ath:AT3G257301e-138K09287RAVRAV-like factor
Gene Cluster
Orthologs
OrthoMCL GroupSpeciesGene List
ORTHOMCL18506(3 genes,3 taxa):Arabidopsis thalianaAT3G25730.1
ORTHOMCL18506(3 genes,3 taxa):Brassica oleraceaBol031048
ORTHOMCL18506(3 genes,3 taxa):Brassica rapaBra026509
Tandem Duplication
ClusterGene Num.Gene List

The tandem genes of this gene was not detected with strict parameters, so there is no information collected in Bolbase.

Synteny Analysis
Synteny Genes
Compared to A.thaliana Compared to B.rapa
Synteny Regions
SpeciesRegionMapped SpeciesMapped RegionNum. of Genewise
B.oleraceaC02:37002693..39291630 (+)A.thalianaChr3:9274550..10682731 (+)109
SpeciesRegionMapped SpeciesMapped RegionNum. of Genewise
B.oleraceaC02:36466493..40300889 (+)B.rapaA06:18253952..20030802 (+)134
Trplicated Block
BlockBest HitStartENDChromosomeSubgenomeNum. of Gene Pairs on Block

Note: this gene was no corresponding triplicated genes.

 
@2012 Department of Genomics and Molecular Biology, Oil Crops Research Institute.


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