Basic Information
Gene Model:Bol031011
Gene Family:Not classificated
Chromosome:C01
Scaffold:Scaffold000057
Sequence:
 | 
Gene Structure
Nucleotide Length:3146 bp
Transcript Length:1779 bp
Protein Length:592 aa
Strand:-
Location:C01: 30629337 : 30632482
Gene CDSs(12): 1-408 | 497-598 | 724-780 | 916-981 | 1377-1553 | 1632-1718 | 1807-1871 | 1945-2021 | 2095-2141 | 2235-2365 | 2471-2540 | 2655-3146 |
Protein Sequence Features
Interpro
DatabaseTermsIdentifierStartEndE-valueInterPro IDDescription
ProfileScanPS51181PPASE_TENSIN 133 312 31.418IPR014019Phosphatase tensin type
ProfileScanPS51182C2_TENSIN 319 446 16.528IPR014020Tensin phosphatase, C2 domain
HMMPantherPTHR12305PHOSPHATASE WITH HOM 136 589 0Not foundNot found
HMMPantherPTHR12305:SF8PTEN-RELATED, ARATH 136 589 0Not foundNot found
HMMPfamPF10409PTEN_C2 317 445 9e-29IPR014020Tensin phosphatase, C2 domain
PatternScanPS00383TYR_PHOSPHATASE_1 249 259 NAIPR016130Protein-tyrosine phosphatase, active site
superfamilySSF52799(Phosphotyrosine pro 147 313 1e-38Not foundNot found
superfamilySSF49562C2 domain (Calcium/l 389 447 3.9e-06IPR008973C2 calcium/lipid-binding region, CaLB
Gene3DG3DSA:3.90.190.10no description 126 309 3.6e-65Not foundNot found
Gene Ontology
GO TermGO TypeDescription
GO:0004725 Molecular Function protein tyrosine phosphatase activity
GO:0016311 Biological Process dephosphorylation
GO:0016791 Molecular Function phosphatase activity
Swiss-Prot
Best HitE_value Description
Q9PUT62e-54PTEN_XENLA Phosphatidylinositol-3,4,5-trisphosphate 3-phosphatase and dual-specificity protein phosphatase PTEN OS=Xenopus laevis GN=pten PE=2 SV=1
TrEMBL
Best HitE_value Description
Q9LT750.0Q9LT75_ARATH Tyrosine phosphatase-like protein OS=Arabidopsis thaliana GN=At3g19420 PE=2 SV=1
KEGG
Best HitE_valueKOEC or Symbol Description
ath:AT3G194200.0K01110E3.1.3.67, PTENphosphatidylinositol-3,4,5-trisphosphate 3-phosphatase
Gene Cluster
Orthologs
OrthoMCL GroupSpeciesGene List
ORTHOMCL1550(17 genes,8 taxa):Arabidopsis thalianaAT3G19420.1
ORTHOMCL1550(17 genes,8 taxa):Arabidopsis thalianaAT3G50110.1
ORTHOMCL1550(17 genes,8 taxa):Brassica oleraceaBol016970
ORTHOMCL1550(17 genes,8 taxa):Brassica oleraceaBol018098
ORTHOMCL1550(17 genes,8 taxa):Brassica oleraceaBol031011
ORTHOMCL1550(17 genes,8 taxa):Brassica rapaBra012908
ORTHOMCL1550(17 genes,8 taxa):Brassica rapaBra022420
ORTHOMCL1550(17 genes,8 taxa):Brassica rapaBra022421
ORTHOMCL1550(17 genes,8 taxa):Brassica rapaBra038209
ORTHOMCL1550(17 genes,8 taxa):Vitis viniferaGSVIVT01003178001
ORTHOMCL1550(17 genes,8 taxa):Vitis viniferaGSVIVT01022060001
ORTHOMCL1550(17 genes,8 taxa):Oryza sativaOs12t0407500-01
ORTHOMCL1550(17 genes,8 taxa):Oryza sativaOs12t0407500-02
ORTHOMCL1550(17 genes,8 taxa):Populus trichocarpaPOPTR_0001s30940.1
ORTHOMCL1550(17 genes,8 taxa):Populus trichocarpaPOPTR_0009s10080.1
ORTHOMCL1550(17 genes,8 taxa):Sorghum bicolorSb02g000980.1
ORTHOMCL1550(17 genes,8 taxa):Carica papayaevm.TU.supercontig_200.15
Tandem Duplication
ClusterGene Num.Gene List

The tandem genes of this gene was not detected with strict parameters, so there is no information collected in Bolbase.

Synteny Analysis
Synteny Genes
Compared to A.thaliana Compared to B.rapa
Synteny Regions
SpeciesRegionMapped SpeciesMapped RegionNum. of Genewise
B.oleraceaC01:30267937..32245490 (-)A.thalianaChr3:6023866..6921556 (+)111
SpeciesRegionMapped SpeciesMapped RegionNum. of Genewise
B.oleraceaC01:30315377..31635754 (+)B.rapaA08:16000036..16754842 (-)18
Trplicated Block
BlockBest HitStartENDChromosomeSubgenomeNum. of Gene Pairs on Block
FAT3G1942067313766735623Chr3Subgenome_I317
 
@2012 Department of Genomics and Molecular Biology, Oil Crops Research Institute.


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