Basic Information
Gene Model:Bol031005
Gene Family:U-box Gene Family
Chromosome:C01
Scaffold:Scaffold000057
Sequence:
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Gene Structure
Nucleotide Length:1254 bp
Transcript Length:1254 bp
Protein Length:417 aa
Strand:+
Location:C01: 30733021 : 30734274
Gene CDSs(1): 1-1254 |
Protein Sequence Features
Interpro
DatabaseTermsIdentifierStartEndE-valueInterPro IDDescription
HMMPantherPTHR22904:SF27CARBOXY TERMINUS OF 13 87 3.9e-11Not foundNot found
HMMPantherPTHR22904TPR REPEAT CONTAININ 13 87 3.9e-11Not foundNot found
HMMPfamPF04564U-box 13 88 3.2e-31IPR003613U box domain
Segsegseg 354 375 NANot foundNot found
Segsegseg 382 395 NANot foundNot found
Segsegseg 166 178 NANot foundNot found
Segsegseg 121 133 NANot foundNot found
HMMSmartSM00504no description 17 81 3.8e-33IPR003613U box domain
superfamilySSF57850RING/U-box 2 84 7.9e-14Not foundNot found
superfamilySSF48371ARM repeat 55 396 3.2e-35IPR016024Armadillo-type fold
Gene3DG3DSA:1.25.10.10no description 124 394 7.9e-15IPR011989Armadillo-like helical
Gene3DG3DSA:3.30.40.10no description 10 88 2.4e-25Not foundNot found
Gene Ontology
GO TermGO TypeDescription
GO:0000151 Cellular Component ubiquitin ligase complex
GO:0004842 Molecular Function ubiquitin-protein ligase activity
GO:0005488 Molecular Function binding
GO:0016567 Biological Process protein ubiquitination
Swiss-Prot
Best HitE_value Description
Q9LT790.0PUB25_ARATH U-box domain-containing protein 25 OS=Arabidopsis thaliana GN=PUB25 PE=2 SV=1
TrEMBL
Best HitE_value Description
A8IXJ00.0A8IXJ0_BRACM U-box domain-containing protein OS=Brassica campestris PE=2 SV=1
KEGG
Best HitE_valueKOEC or Symbol Description
vcn:VOLCADRAFT_678407e-08K09561STUB1, CHIPSTIP1 homology and U-box containing protein 1
Gene Cluster
Orthologs
OrthoMCL GroupSpeciesGene List
ORTHOMCL1980(15 genes,8 taxa):Arabidopsis thalianaAT1G49780.1
ORTHOMCL1980(15 genes,8 taxa):Arabidopsis thalianaAT3G19380.1
ORTHOMCL1980(15 genes,8 taxa):Brassica oleraceaBol018091
ORTHOMCL1980(15 genes,8 taxa):Brassica oleraceaBol023451
ORTHOMCL1980(15 genes,8 taxa):Brassica oleraceaBol031005
ORTHOMCL1980(15 genes,8 taxa):Brassica rapaBra014206
ORTHOMCL1980(15 genes,8 taxa):Brassica rapaBra022415
ORTHOMCL1980(15 genes,8 taxa):Brassica rapaBra022417
ORTHOMCL1980(15 genes,8 taxa):Brassica rapaBra038205
ORTHOMCL1980(15 genes,8 taxa):Vitis viniferaGSVIVT01031720001
ORTHOMCL1980(15 genes,8 taxa):Oryza sativaOs02t0548700-00
ORTHOMCL1980(15 genes,8 taxa):Populus trichocarpaPOPTR_0004s14720.1
ORTHOMCL1980(15 genes,8 taxa):Populus trichocarpaPOPTR_0009s10310.1
ORTHOMCL1980(15 genes,8 taxa):Sorghum bicolorSb04g022280.1
ORTHOMCL1980(15 genes,8 taxa):Carica papayaevm.TU.supercontig_1383.1
Tandem Duplication
ClusterGene Num.Gene List

The tandem genes of this gene was not detected with strict parameters, so there is no information collected in Bolbase.

Synteny Analysis
Synteny Genes
Compared to A.thaliana Compared to B.rapa
Synteny Regions
SpeciesRegionMapped SpeciesMapped RegionNum. of Genewise
B.oleraceaC01:30267937..32245490 (-)A.thalianaChr3:6023866..6921556 (+)111
SpeciesRegionMapped SpeciesMapped RegionNum. of Genewise
B.oleraceaC01:30315377..31635754 (+)B.rapaA08:16000036..16754842 (-)18
Trplicated Block
BlockBest HitStartENDChromosomeSubgenomeNum. of Gene Pairs on Block
FAT3G1938067143926716099Chr3Subgenome_I317
 
@2012 Department of Genomics and Molecular Biology, Oil Crops Research Institute.


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