Basic Information
Gene Model:Bol030990
Gene Family:Transcription Factor Families
Chromosome:C01
Scaffold:Scaffold000057
Sequence:
 | 
Gene Structure
Nucleotide Length:2665 bp
Transcript Length:1032 bp
Protein Length:343 aa
Strand:+
Location:C01: 30979954 : 30982618
Gene CDSs(5): 1-249 | 341-540 | 641-709 | 1124-1577 | 2606-2665 |
Protein Sequence Features
Interpro
DatabaseTermsIdentifierStartEndE-valueInterPro IDDescription
Segsegseg 125 135 NANot foundNot found
Segsegseg 175 190 NANot foundNot found
ProfileScanPS50863B3 246 340 12.633IPR003340Transcriptional factor B3
ProfileScanPS50863B3 5 99 14.466IPR003340Transcriptional factor B3
Gene3DG3DSA:2.40.330.10no description 236 342 1.3e-05Not foundNot found
Gene3DG3DSA:2.40.330.10no description 3 101 9.8e-22Not foundNot found
HMMPfamPF02362B3 5 101 1.9e-19IPR003340Transcriptional factor B3
HMMPfamPF02362B3 245 342 8.7e-25IPR003340Transcriptional factor B3
Gene Ontology
GO TermGO TypeDescription
GO:0003677 Molecular Function DNA binding
GO:0006355 Biological Process regulation of transcription, DNA-dependent
Swiss-Prot
Best HitE_value Description
Q8L3W10.0VRN1_ARATH B3 domain-containing transcription factor VRN1 OS=Arabidopsis thaliana GN=VRN1 PE=2 SV=1
TrEMBL
Best HitE_value Description
Q6R2U81e-167Q6R2U8_BRACM Reduced vernalization response 1 OS=Brassica campestris PE=2 SV=1
KEGG
Best HitE_valueKOEC or Symbol Description

Note: this gene was not detected its best hit in KEGG database.

Gene Cluster
Orthologs
OrthoMCL GroupSpeciesGene List
ORTHOMCL6207(10 genes,6 taxa):Arabidopsis thalianaAT3G18990.1
ORTHOMCL6207(10 genes,6 taxa):Brassica oleraceaBol030990
ORTHOMCL6207(10 genes,6 taxa):Brassica rapaBra037544
ORTHOMCL6207(10 genes,6 taxa):Vitis viniferaGSVIVT01031852001
ORTHOMCL6207(10 genes,6 taxa):Populus trichocarpaPOPTR_0004s15400.1
ORTHOMCL6207(10 genes,6 taxa):Populus trichocarpaPOPTR_0004s15410.1
ORTHOMCL6207(10 genes,6 taxa):Populus trichocarpaPOPTR_0009s11170.1
ORTHOMCL6207(10 genes,6 taxa):Populus trichocarpaPOPTR_0009s11170.2
ORTHOMCL6207(10 genes,6 taxa):Carica papayaevm.TU.supercontig_62.74
ORTHOMCL6207(10 genes,6 taxa):Carica papayaevm.TU.supercontig_62.76
Tandem Duplication
ClusterGene Num.Gene List

The tandem genes of this gene was not detected with strict parameters, so there is no information collected in Bolbase.

Synteny Analysis
Synteny Genes
Compared to A.thaliana Compared to B.rapa
Synteny Regions
SpeciesRegionMapped SpeciesMapped RegionNum. of Genewise
B.oleraceaC01:30267937..32245490 (-)A.thalianaChr3:6023866..6921556 (+)111
SpeciesRegionMapped SpeciesMapped RegionNum. of Genewise
B.oleraceaC01:30315377..31635754 (+)B.rapaA08:16000036..16754842 (-)18
Trplicated Block
BlockBest HitStartENDChromosomeSubgenomeNum. of Gene Pairs on Block
FAT3G1899065488696551853Chr3Subgenome_I317
 
@2012 Department of Genomics and Molecular Biology, Oil Crops Research Institute.


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