Basic Information
Gene Model:Bol030920
Gene Family:Not classificated
Chromosome:C01
Scaffold:Scaffold000057
Sequence:
 | 
Gene Structure
Nucleotide Length:1564 bp
Transcript Length:1086 bp
Protein Length:361 aa
Strand:+
Location:C01: 31723750 : 31725313
Gene CDSs(6): 1-169 | 246-397 | 495-888 | 971-1087 | 1184-1246 | 1374-1564 |
Protein Sequence Features
Interpro
DatabaseTermsIdentifierStartEndE-valueInterPro IDDescription
HMMPfamPF00892DUF6 193 322 8.5e-15IPR000620Protein of unknown function DUF6, transmembrane
HMMPfamPF00892DUF6 21 154 6.3e-08IPR000620Protein of unknown function DUF6, transmembrane
superfamilySSF103481Multidrug resistance 46 157 8e-07Not foundNot found
superfamilySSF103481Multidrug resistance 218 329 1.9e-11Not foundNot found
Gene Ontology
GO TermGO TypeDescription
GO:0016020 Cellular Component membrane
Swiss-Prot
Best HitE_value Description
Q6J1631e-1165NG4_PINTA Auxin-induced protein 5NG4 OS=Pinus taeda PE=2 SV=1
TrEMBL
Best HitE_value Description
Q9LV200.0Q9LV20_ARATH Nodulin-like protein OS=Arabidopsis thaliana PE=4 SV=1
KEGG
Best HitE_valueKOEC or Symbol Description

Note: this gene was not detected its best hit in KEGG database.

Gene Cluster
Orthologs
OrthoMCL GroupSpeciesGene List
ORTHOMCL3853(12 genes,8 taxa):Arabidopsis thalianaAT3G18200.1
ORTHOMCL3853(12 genes,8 taxa):Brassica oleraceaBol022900
ORTHOMCL3853(12 genes,8 taxa):Brassica oleraceaBol030920
ORTHOMCL3853(12 genes,8 taxa):Brassica oleraceaBol045122
ORTHOMCL3853(12 genes,8 taxa):Brassica rapaBra001699
ORTHOMCL3853(12 genes,8 taxa):Brassica rapaBra018748
ORTHOMCL3853(12 genes,8 taxa):Brassica rapaBra021301
ORTHOMCL3853(12 genes,8 taxa):Vitis viniferaGSVIVT01008361001
ORTHOMCL3853(12 genes,8 taxa):Oryza sativaOs01t0117900-02
ORTHOMCL3853(12 genes,8 taxa):Populus trichocarpaPOPTR_0015s04130.1
ORTHOMCL3853(12 genes,8 taxa):Sorghum bicolorSb03g008060.1
ORTHOMCL3853(12 genes,8 taxa):Carica papayaevm.TU.supercontig_999.4
Tandem Duplication
ClusterGene Num.Gene List

The tandem genes of this gene was not detected with strict parameters, so there is no information collected in Bolbase.

Synteny Analysis
Synteny Genes
Compared to A.thaliana Compared to B.rapa
Synteny Regions
SpeciesRegionMapped SpeciesMapped RegionNum. of Genewise
B.oleraceaC01:30267937..32245490 (-)A.thalianaChr3:6023866..6921556 (+)111
SpeciesRegionMapped SpeciesMapped RegionNum. of Genewise
B.oleraceaC01:31170173..31955337 (+)B.rapaA06:1637769..1920635 (-)11
Trplicated Block
BlockBest HitStartENDChromosomeSubgenomeNum. of Gene Pairs on Block
FAT3G1820062343066236091Chr3Subgenome_I317
 
@2012 Department of Genomics and Molecular Biology, Oil Crops Research Institute.


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