Basic Information
Gene Model:Bol030899
Gene Family:Transcription Factor Families
Chromosome:C01
Scaffold:Scaffold000057
Sequence:
 | 
Gene Structure
Nucleotide Length:1143 bp
Transcript Length:795 bp
Protein Length:264 aa
Strand:+
Location:C01: 31878816 : 31879958
Gene CDSs(4): 1-252 | 350-474 | 593-917 | 1051-1143 |
Protein Sequence Features
Interpro
DatabaseTermsIdentifierStartEndE-valueInterPro IDDescription
Gene3DG3DSA:2.40.330.10no description 6 113 2.4e-11Not foundNot found
ProfileScanPS50863B3 227 264 6.386IPR003340Transcriptional factor B3
ProfileScanPS50863B3 17 111 11.166IPR003340Transcriptional factor B3
Segsegseg 83 94 NANot foundNot found
Gene Ontology
GO TermGO TypeDescription
GO:0003677 Molecular Function DNA binding
GO:0006355 Biological Process regulation of transcription, DNA-dependent
Swiss-Prot
Best HitE_value Description
Q680D93e-75Y5475_ARATH B3 domain-containing protein At5g25475 OS=Arabidopsis thaliana GN=At5g25475 PE=2 SV=1
TrEMBL
Best HitE_value Description
A5AN707e-07A5AN70_VITVI Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_027623 PE=4 SV=1
KEGG
Best HitE_valueKOEC or Symbol Description

Note: this gene was not detected its best hit in KEGG database.

Gene Cluster
Orthologs
OrthoMCL GroupSpeciesGene List
ORTHOMCL26404(2 genes,2 taxa):Brassica oleraceaBol030899
ORTHOMCL26404(2 genes,2 taxa):Brassica rapaBra021284
Tandem Duplication
ClusterGene Num.Gene List

The tandem genes of this gene was not detected with strict parameters, so there is no information collected in Bolbase.

Synteny Analysis
Synteny Genes
Compared to A.thaliana Compared to B.rapa
Synteny Regions
SpeciesRegionMapped SpeciesMapped RegionNum. of Genewise
B.oleraceaC01:30267937..32245490 (-)A.thalianaChr3:6023866..6921556 (+)111
SpeciesRegionMapped SpeciesMapped RegionNum. of Genewise
B.oleraceaC01:31170173..31955337 (+)B.rapaA06:1637769..1920635 (-)11
Trplicated Block
BlockBest HitStartENDChromosomeSubgenomeNum. of Gene Pairs on Block

Note: this gene was no corresponding triplicated genes.

 
@2012 Department of Genomics and Molecular Biology, Oil Crops Research Institute.


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