Basic Information
Gene Model:Bol030815
Gene Family:Sulfurtransferasese/Rhodanese Gene Family
Chromosome:C05
Scaffold:Scaffold000058_P1
Sequence:
 | 
Gene Structure
Nucleotide Length:2346 bp
Transcript Length:1272 bp
Protein Length:423 aa
Strand:-
Location:C05: 13766293 : 13768638
Gene CDSs(8): 1-303 | 644-697 | 808-957 | 1083-1245 | 1398-1489 | 1633-1736 | 1841-2116 | 2217-2346 |
Protein Sequence Features
Interpro
DatabaseTermsIdentifierStartEndE-valueInterPro IDDescription
Segsegseg 3 15 NANot foundNot found
HMMPantherPTHR18838RHODANESE-LIKE DOMAI 18 421 4.2e-95Not foundNot found
ProfileScanPS50206RHODANESE_3 212 315 15.768IPR001763Rhodanese-like
HMMPfamPF00581Rhodanese 202 309 2.5e-13IPR001763Rhodanese-like
Gene3DG3DSA:3.40.250.10no description 212 310 4.8e-13IPR001763Rhodanese-like
HMMSmartSM00450no description 189 312 1e-11IPR001763Rhodanese-like
superfamilySSF52821Rhodanese/Cell cycle 165 328 5.6e-18IPR001763Rhodanese-like
Gene Ontology
GO TermGO TypeDescription

Note: this gene was not detected its best hit in Swiss-Prot database.

Swiss-Prot
Best HitE_value Description
Q6ME972e-61Y378_PARUW UPF0176 protein pc0378 OS=Protochlamydia amoebophila (strain UWE25) GN=pc0378 PE=3 SV=1
TrEMBL
Best HitE_value Description
Q9LMU31e-176Q9LMU3_ARATH F2H15.8 protein OS=Arabidopsis thaliana GN=At1g17850 PE=4 SV=1
KEGG
Best HitE_valueKOEC or Symbol Description
ota:Ot14g028803e-20K10838XPCxeroderma pigmentosum group C-complementing protein
Gene Cluster
Orthologs
OrthoMCL GroupSpeciesGene List
ORTHOMCL7210(9 genes,8 taxa):Arabidopsis thalianaAT1G17850.1
ORTHOMCL7210(9 genes,8 taxa):Brassica oleraceaBol030815
ORTHOMCL7210(9 genes,8 taxa):Brassica rapaBra025943
ORTHOMCL7210(9 genes,8 taxa):Vitis viniferaGSVIVT01029375001
ORTHOMCL7210(9 genes,8 taxa):Oryza sativaOs03t0861700-01
ORTHOMCL7210(9 genes,8 taxa):Oryza sativaOs03t0861700-02
ORTHOMCL7210(9 genes,8 taxa):Populus trichocarpaPOPTR_0015s05490.1
ORTHOMCL7210(9 genes,8 taxa):Sorghum bicolorSb01g000270.1
ORTHOMCL7210(9 genes,8 taxa):Carica papayaevm.TU.supercontig_111.36
Tandem Duplication
ClusterGene Num.Gene List

The tandem genes of this gene was not detected with strict parameters, so there is no information collected in Bolbase.

Synteny Analysis
Synteny Genes
Compared to A.thaliana Compared to B.rapa
Synteny Regions
SpeciesRegionMapped SpeciesMapped RegionNum. of Genewise
B.oleraceaC05:13735892..16366585 (+)A.thalianaChr1:6125356..7289778 (+)187
SpeciesRegionMapped SpeciesMapped RegionNum. of Genewise
B.oleraceaC05:12355730..13786129 (+)B.rapaA09:24204545..24721879 (-)15
Trplicated Block
BlockBest HitStartENDChromosomeSubgenomeNum. of Gene Pairs on Block
AAT1G1785061460746148850Chr1Subgenome_III(LF)90
 
@2012 Department of Genomics and Molecular Biology, Oil Crops Research Institute.


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