Basic Information
Gene Model:Bol030806
Gene Family:Not classificated
Chromosome:C05
Scaffold:Scaffold000058_P1
Sequence:
 | 
Gene Structure
Nucleotide Length:2163 bp
Transcript Length:1218 bp
Protein Length:405 aa
Strand:+
Location:C05: 13889849 : 13892011
Gene CDSs(10): 1-147 | 273-320 | 409-498 | 624-707 | 797-958 | 1066-1142 | 1235-1279 | 1383-1479 | 1556-1664 | 1805-2163 |
Protein Sequence Features
Interpro
DatabaseTermsIdentifierStartEndE-valueInterPro IDDescription
HMMPantherPTHR13832PROTEIN PHOSPHATASE 85 404 6.5e-132IPR015655Protein phosphatase 2C
HMMPantherPTHR13832:SF89PROTEIN PHOSPHATASE 85 404 6.5e-132Not foundNot found
Segsegseg 161 175 NANot foundNot found
Gene3DG3DSA:3.60.40.10no description 86 402 1.9e-53IPR001932Protein phosphatase 2C-related
HMMSmartSM00332no description 78 400 4.7e-60IPR001932Protein phosphatase 2C-related
superfamilySSF81606Protein serine/threo 67 403 1.4e-56IPR001932Protein phosphatase 2C-related
HMMPfamPF00481PP2C 87 395 1.6e-50IPR014045Protein phosphatase 2C, N-terminal
Gene Ontology
GO TermGO TypeDescription
GO:0003824 Molecular Function catalytic activity
Swiss-Prot
Best HitE_value Description
Q9LMT11e-159P2C08_ARATH Probable protein phosphatase 2C 8 OS=Arabidopsis thaliana GN=At1g18030 PE=2 SV=2
TrEMBL
Best HitE_value Description
A7PGZ61e-124A7PGZ6_VITVI Chromosome chr17 scaffold_16, whole genome shotgun sequence OS=Vitis vinifera GN=GSVIVT00017748001 PE=4 SV=1
KEGG
Best HitE_valueKOEC or Symbol Description
spu:5853694e-40K01090E3.1.3.16protein phosphatase
Gene Cluster
Orthologs
OrthoMCL GroupSpeciesGene List
ORTHOMCL9008(8 genes,8 taxa):Arabidopsis thalianaAT1G18030.1
ORTHOMCL9008(8 genes,8 taxa):Brassica oleraceaBol030806
ORTHOMCL9008(8 genes,8 taxa):Brassica rapaBra025933
ORTHOMCL9008(8 genes,8 taxa):Vitis viniferaGSVIVT01008355001
ORTHOMCL9008(8 genes,8 taxa):Oryza sativaOs09t0314400-01
ORTHOMCL9008(8 genes,8 taxa):Populus trichocarpaPOPTR_0015s04120.1
ORTHOMCL9008(8 genes,8 taxa):Sorghum bicolorSb02g021050.1
ORTHOMCL9008(8 genes,8 taxa):Carica papayaevm.TU.supercontig_3.446
Tandem Duplication
ClusterGene Num.Gene List
Cluster_10372Bol030806 Bol030807 
Synteny Analysis
Synteny Genes
Compared to A.thaliana Compared to B.rapa
Synteny Regions
SpeciesRegionMapped SpeciesMapped RegionNum. of Genewise
B.oleraceaC05:13735892..16366585 (+)A.thalianaChr1:6125356..7289778 (+)187
SpeciesRegionMapped SpeciesMapped RegionNum. of Genewise
B.oleraceaC05:13735892..14968809 (+)B.rapaA09:4146452..4572882 (+)45
Trplicated Block
BlockBest HitStartENDChromosomeSubgenomeNum. of Gene Pairs on Block
AAT1G1803062043436206988Chr1Subgenome_III(LF)90
 
@2012 Department of Genomics and Molecular Biology, Oil Crops Research Institute.


logo