Basic Information
Gene Model:Bol030723
Gene Family:Not classificated
Chromosome:C05
Scaffold:Scaffold000058_P1
Sequence:
 | 
Gene Structure
Nucleotide Length:2121 bp
Transcript Length:1569 bp
Protein Length:522 aa
Strand:+
Location:C05: 14556483 : 14558603
Gene CDSs(2): 1-1092 | 1645-2121 |
Protein Sequence Features
Interpro
DatabaseTermsIdentifierStartEndE-valueInterPro IDDescription
HMMPantherPTHR21576:SF1UNCHARACTERIZED NODU 4 520 1.3e-246Not foundNot found
HMMPantherPTHR21576UNCHARACTERIZED NODU 4 520 1.3e-246Not foundNot found
Segsegseg 191 203 NANot foundNot found
Segsegseg 250 271 NANot foundNot found
Segsegseg 75 86 NANot foundNot found
superfamilySSF103473MFS general substrat 6 215 5.6e-06IPR016196Major facilitator superfamily, general substrate transporter
superfamilySSF103473MFS general substrat 222 510 6.7e-22IPR016196Major facilitator superfamily, general substrate transporter
HMMPfamPF07690MFS_1 316 505 4.4e-08IPR011701Major facilitator superfamily MFS-1
HMMPfamPF06813Nodulin-like 9 267 4.4e-67IPR010658Nodulin-like
Gene Ontology
GO TermGO TypeDescription
GO:0055085 Biological Process transmembrane transport
Swiss-Prot
Best HitE_value Description
Q6CGU81e-08MCH1_YARLI Probable transporter MCH1 OS=Yarrowia lipolytica GN=MCH1 PE=3 SV=1
TrEMBL
Best HitE_value Description
Q9LMD40.0Q9LMD4_ARATH F14D16.8 OS=Arabidopsis thaliana GN=At1g18940 PE=4 SV=1
KEGG
Best HitE_valueKOEC or Symbol Description

Note: this gene was not detected its best hit in KEGG database.

Gene Cluster
Orthologs
OrthoMCL GroupSpeciesGene List
ORTHOMCL971(20 genes,7 taxa):Arabidopsis thalianaAT1G18940.1
ORTHOMCL971(20 genes,7 taxa):Arabidopsis thalianaAT1G74780.1
ORTHOMCL971(20 genes,7 taxa):Arabidopsis thalianaAT2G34350.1
ORTHOMCL971(20 genes,7 taxa):Arabidopsis thalianaAT2G34355.1
ORTHOMCL971(20 genes,7 taxa):Brassica oleraceaBol027340
ORTHOMCL971(20 genes,7 taxa):Brassica oleraceaBol030723
ORTHOMCL971(20 genes,7 taxa):Brassica oleraceaBol037871
ORTHOMCL971(20 genes,7 taxa):Brassica oleraceaBol037872
ORTHOMCL971(20 genes,7 taxa):Brassica oleraceaBol039932
ORTHOMCL971(20 genes,7 taxa):Brassica rapaBra003786
ORTHOMCL971(20 genes,7 taxa):Brassica rapaBra005435
ORTHOMCL971(20 genes,7 taxa):Brassica rapaBra021904
ORTHOMCL971(20 genes,7 taxa):Brassica rapaBra021905
ORTHOMCL971(20 genes,7 taxa):Brassica rapaBra025702
ORTHOMCL971(20 genes,7 taxa):Vitis viniferaGSVIVT01008083001
ORTHOMCL971(20 genes,7 taxa):Oryza sativaOs12t0639100-01
ORTHOMCL971(20 genes,7 taxa):Oryza sativaOs12t0639100-02
ORTHOMCL971(20 genes,7 taxa):Oryza sativaOs12t0639100-03
ORTHOMCL971(20 genes,7 taxa):Populus trichocarpaPOPTR_0015s07820.1
ORTHOMCL971(20 genes,7 taxa):Carica papayaevm.TU.supercontig_1718.2
Tandem Duplication
ClusterGene Num.Gene List

The tandem genes of this gene was not detected with strict parameters, so there is no information collected in Bolbase.

Synteny Analysis
Synteny Genes
Compared to A.thaliana Compared to B.rapa
Synteny Regions
SpeciesRegionMapped SpeciesMapped RegionNum. of Genewise
B.oleraceaC05:14221242..16366585 (+)A.thalianaChr1:27954231..28717416 (+)69
SpeciesRegionMapped SpeciesMapped RegionNum. of Genewise
B.oleraceaC05:13735892..14968809 (+)B.rapaA09:4146452..4572882 (+)45
Trplicated Block
BlockBest HitStartENDChromosomeSubgenomeNum. of Gene Pairs on Block
AAT1G1894065438526545592Chr1Subgenome_III(LF)90
 
@2012 Department of Genomics and Molecular Biology, Oil Crops Research Institute.


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