Basic Information
Gene Model:Bol030717
Gene Family:Not classificated
Chromosome:C03
Scaffold:Scaffold000059
Sequence:
 | 
Gene Structure
Nucleotide Length:1882 bp
Transcript Length:906 bp
Protein Length:301 aa
Strand:-
Location:C03: 19163300 : 19165181
Gene CDSs(5): 1-156 | 233-617 | 722-838 | 1244-1306 | 1698-1882 |
Protein Sequence Features
Interpro
DatabaseTermsIdentifierStartEndE-valueInterPro IDDescription
HMMPfamPF00892DUF6 19 146 5.9e-11IPR000620Protein of unknown function DUF6, transmembrane
superfamilySSF103481Multidrug resistance 44 147 5.1e-08Not foundNot found
Segsegseg 243 254 NANot foundNot found
Gene Ontology
GO TermGO TypeDescription
GO:0016020 Cellular Component membrane
Swiss-Prot
Best HitE_value Description
Q6J1633e-325NG4_PINTA Auxin-induced protein 5NG4 OS=Pinus taeda PE=2 SV=1
TrEMBL
Best HitE_value Description
Q8GYT01e-134Q8GYT0_ARATH Putative uncharacterized protein At4g01450/F11O4_14 OS=Arabidopsis thaliana GN=At4g01450/F11O4_14 PE=2 SV=1
KEGG
Best HitE_valueKOEC or Symbol Description

Note: this gene was not detected its best hit in KEGG database.

Gene Cluster
Orthologs
OrthoMCL GroupSpeciesGene List
ORTHOMCL14201(5 genes,3 taxa):Arabidopsis thalianaAT4G01450.2
ORTHOMCL14201(5 genes,3 taxa):Brassica oleraceaBol030717
ORTHOMCL14201(5 genes,3 taxa):Brassica oleraceaBol040662
ORTHOMCL14201(5 genes,3 taxa):Brassica rapaBra000923
ORTHOMCL14201(5 genes,3 taxa):Brassica rapaBra008548
Tandem Duplication
ClusterGene Num.Gene List

The tandem genes of this gene was not detected with strict parameters, so there is no information collected in Bolbase.

Synteny Analysis
Synteny Genes
Compared to A.thaliana Compared to B.rapa
Synteny Regions
SpeciesRegionMapped SpeciesMapped RegionNum. of Genewise

Note: this gene was not anchored on syntenic regions compared to A.thaliana genome.

SpeciesRegionMapped SpeciesMapped RegionNum. of Genewise
B.oleraceaC03:19058689..19618454 (+)B.rapaA10:12950191..13419552 (-)12
Trplicated Block
BlockBest HitStartENDChromosomeSubgenomeNum. of Gene Pairs on Block
OAT4G01450608454610716Chr4Subgenome_I143
 
@2012 Department of Genomics and Molecular Biology, Oil Crops Research Institute.


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