Basic Information
Gene Model:Bol030606
Gene Family:Protein Kinase Gene Families
Chromosome:C03
Scaffold:Scaffold000059
Sequence:
 | 
Gene Structure
Nucleotide Length:3038 bp
Transcript Length:2043 bp
Protein Length:680 aa
Strand:+
Location:C03: 18033735 : 18036772
Gene CDSs(13): 1-103 | 224-353 | 432-506 | 600-665 | 749-820 | 888-959 | 1045-1116 | 1197-1262 | 1346-1411 | 1491-1879 | 1953-2589 | 2669-2807 | 2883-3038 |
Protein Sequence Features
Interpro
DatabaseTermsIdentifierStartEndE-valueInterPro IDDescription
HMMPantherPTHR23258:SF463STRUBBELIG RECEPTOR 78 654 1e-203Not foundNot found
HMMPantherPTHR23258SERINE-THREONINE PRO 78 654 1e-203Not foundNot found
Segsegseg 621 635 NANot foundNot found
Segsegseg 603 615 NANot foundNot found
Segsegseg 392 399 NANot foundNot found
Segsegseg 415 423 NANot foundNot found
Segsegseg 352 366 NANot foundNot found
Segsegseg 312 329 NANot foundNot found
Segsegseg 289 302 NANot foundNot found
Segsegseg 10 27 NANot foundNot found
Segsegseg 255 282 NANot foundNot found
HMMSmartSM00219no description 469 679 1.2e-10IPR020635Tyrosine-protein kinase, subgroup, catalytic domain
HMMSmartSM00220no description 469 679 8e-10IPR002290Serine/threonine-protein kinase domain
HMMPfamPF07714Pkinase_Tyr 469 673 2.2e-26IPR001245Tyrosine-protein kinase, catalytic domain
HMMPfamPF00560LRR_1 193 214 1.9IPR001611Leucine-rich repeat
HMMPfamPF00560LRR_1 145 167 0.03IPR001611Leucine-rich repeat
HMMPfamPF00560LRR_1 169 191 0.027IPR001611Leucine-rich repeat
HMMPfamPF00560LRR_1 121 143 0.034IPR001611Leucine-rich repeat
HMMPfamPF08263LRRNT_2 31 71 2.8e-06IPR013210Leucine-rich repeat, N-terminal
ProfileScanPS50011PROTEIN_KINASE_DOM 469 680 32.739IPR000719Protein kinase, catalytic domain
Gene3DG3DSA:1.10.510.10no description 549 676 6.9e-32Not foundNot found
Gene3DG3DSA:3.80.10.10no description 28 238 5.1e-35Not foundNot found
Gene3DG3DSA:3.30.200.20no description 423 548 3.2e-17Not foundNot found
superfamilySSF56112Protein kinase-like 454 674 6.6e-59IPR011009Protein kinase-like domain
superfamilySSF52058L domain-like 28 234 5e-36Not foundNot found
Gene Ontology
GO TermGO TypeDescription
GO:0004672 Molecular Function protein kinase activity
GO:0004674 Molecular Function protein serine/threonine kinase activity
GO:0004713 Molecular Function protein tyrosine kinase activity
GO:0005515 Molecular Function protein binding
GO:0005524 Molecular Function ATP binding
GO:0006468 Biological Process protein phosphorylation
Swiss-Prot
Best HitE_value Description
Q6R2K30.0SRF3_ARATH Protein STRUBBELIG-RECEPTOR FAMILY 3 OS=Arabidopsis thaliana GN=SRF3 PE=1 SV=1
TrEMBL
Best HitE_value Description
C0LGQ20.0C0LGQ2_ARATH Leucine-rich repeat receptor-like protein kinase (Fragment) OS=Arabidopsis thaliana GN=LRR-RLK PE=2 SV=1
KEGG
Best HitE_valueKOEC or Symbol Description
pop:POPTR_4134523e-50K13430PBS1serine/threonine-protein kinase PBS1
Gene Cluster
Orthologs
OrthoMCL GroupSpeciesGene List
ORTHOMCL1137(19 genes,8 taxa):Arabidopsis thalianaAT2G20850.1
ORTHOMCL1137(19 genes,8 taxa):Arabidopsis thalianaAT4G03390.1
ORTHOMCL1137(19 genes,8 taxa):Brassica oleraceaBol030606
ORTHOMCL1137(19 genes,8 taxa):Brassica oleraceaBol032156
ORTHOMCL1137(19 genes,8 taxa):Brassica rapaBra000827
ORTHOMCL1137(19 genes,8 taxa):Brassica rapaBra034204
ORTHOMCL1137(19 genes,8 taxa):Vitis viniferaGSVIVT01030565001
ORTHOMCL1137(19 genes,8 taxa):Oryza sativaOs02t0176100-01
ORTHOMCL1137(19 genes,8 taxa):Oryza sativaOs02t0176100-02
ORTHOMCL1137(19 genes,8 taxa):Populus trichocarpaPOPTR_0004s03720.1
ORTHOMCL1137(19 genes,8 taxa):Populus trichocarpaPOPTR_0011s04540.1
ORTHOMCL1137(19 genes,8 taxa):Populus trichocarpaPOPTR_0013s14080.1
ORTHOMCL1137(19 genes,8 taxa):Populus trichocarpaPOPTR_0013s14080.2
ORTHOMCL1137(19 genes,8 taxa):Populus trichocarpaPOPTR_0019s13490.1
ORTHOMCL1137(19 genes,8 taxa):Populus trichocarpaPOPTR_0019s13490.2
ORTHOMCL1137(19 genes,8 taxa):Sorghum bicolorSb02g036540.1
ORTHOMCL1137(19 genes,8 taxa):Sorghum bicolorSb04g005115.1
ORTHOMCL1137(19 genes,8 taxa):Sorghum bicolorSb10g026340.1
ORTHOMCL1137(19 genes,8 taxa):Carica papayaevm.TU.supercontig_34.113
Tandem Duplication
ClusterGene Num.Gene List

The tandem genes of this gene was not detected with strict parameters, so there is no information collected in Bolbase.

Synteny Analysis
Synteny Genes
Compared to A.thaliana Compared to B.rapa
Synteny Regions
SpeciesRegionMapped SpeciesMapped RegionNum. of Genewise
B.oleraceaC03:17891690..19130815 (-)A.thalianaChr4:681862..1610037 (+)84
SpeciesRegionMapped SpeciesMapped RegionNum. of Genewise
B.oleraceaC03:17961497..18995915 (+)B.rapaA10:13375706..13865706 (-)20
Trplicated Block
BlockBest HitStartENDChromosomeSubgenomeNum. of Gene Pairs on Block
OAT4G0339014904651495103Chr4Subgenome_I143
 
@2012 Department of Genomics and Molecular Biology, Oil Crops Research Institute.


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