Basic Information
Gene Model:Bol030568
Gene Family:Not classificated
Chromosome:C03
Scaffold:Scaffold000059
Sequence:
 | 
Gene Structure
Nucleotide Length:2549 bp
Transcript Length:1323 bp
Protein Length:440 aa
Strand:+
Location:C03: 17692557 : 17695105
Gene CDSs(3): 1-937 | 1234-1358 | 2289-2549 |
Protein Sequence Features
Interpro
DatabaseTermsIdentifierStartEndE-valueInterPro IDDescription
HMMPfamPF01657DUF26 193 245 7.1e-20IPR002902Protein of unknown function DUF26
HMMPfamPF01657DUF26 68 127 1e-12IPR002902Protein of unknown function DUF26
HMMPantherPTHR23258SERINE-THREONINE PRO 192 427 1.9e-55Not foundNot found
HMMPantherPTHR23258:SF430SERINE/THREONINE REC 192 427 1.9e-55Not foundNot found
superfamilySSF56112Protein kinase-like 378 440 0.0019IPR011009Protein kinase-like domain
superfamilySSF56112Protein kinase-like 319 365 2.6e-06IPR011009Protein kinase-like domain
Segsegseg 281 294 NANot foundNot found
Gene Ontology
GO TermGO TypeDescription

Note: this gene was not detected its best hit in Swiss-Prot database.

Swiss-Prot
Best HitE_value Description
Q9XEC71e-151CRK37_ARATH Cysteine-rich receptor-like protein kinase 37 OS=Arabidopsis thaliana GN=CRK37 PE=2 SV=1
TrEMBL
Best HitE_value Description
B9HYK21e-45B9HYK2_POPTR Predicted protein OS=Populus trichocarpa GN=POPTRDRAFT_568244 PE=4 SV=1
KEGG
Best HitE_valueKOEC or Symbol Description

Note: this gene was not detected its best hit in KEGG database.

Gene Cluster
Orthologs
OrthoMCL GroupSpeciesGene List
ORTHOMCL676(24 genes,3 taxa):Arabidopsis thalianaAT4G04490.1
ORTHOMCL676(24 genes,3 taxa):Arabidopsis thalianaAT4G04500.1
ORTHOMCL676(24 genes,3 taxa):Arabidopsis thalianaAT4G04510.1
ORTHOMCL676(24 genes,3 taxa):Arabidopsis thalianaAT4G04540.1
ORTHOMCL676(24 genes,3 taxa):Arabidopsis thalianaAT4G04570.1
ORTHOMCL676(24 genes,3 taxa):Brassica oleraceaBol004591
ORTHOMCL676(24 genes,3 taxa):Brassica oleraceaBol004594
ORTHOMCL676(24 genes,3 taxa):Brassica oleraceaBol012046
ORTHOMCL676(24 genes,3 taxa):Brassica oleraceaBol030568
ORTHOMCL676(24 genes,3 taxa):Brassica rapaBra000796
ORTHOMCL676(24 genes,3 taxa):Brassica rapaBra000797
ORTHOMCL676(24 genes,3 taxa):Brassica rapaBra000799
ORTHOMCL676(24 genes,3 taxa):Brassica rapaBra000800
ORTHOMCL676(24 genes,3 taxa):Brassica rapaBra017551
ORTHOMCL676(24 genes,3 taxa):Brassica rapaBra017552
ORTHOMCL676(24 genes,3 taxa):Brassica rapaBra018492
ORTHOMCL676(24 genes,3 taxa):Brassica rapaBra018493
ORTHOMCL676(24 genes,3 taxa):Brassica rapaBra018496
ORTHOMCL676(24 genes,3 taxa):Brassica rapaBra022095
ORTHOMCL676(24 genes,3 taxa):Brassica rapaBra029470
ORTHOMCL676(24 genes,3 taxa):Brassica rapaBra029495
ORTHOMCL676(24 genes,3 taxa):Brassica rapaBra029496
ORTHOMCL676(24 genes,3 taxa):Brassica rapaBra029499
ORTHOMCL676(24 genes,3 taxa):Brassica rapaBra029500
Tandem Duplication
ClusterGene Num.Gene List
Cluster_1524Bol030563 Bol030564 Bol030566 Bol030568 
Synteny Analysis
Synteny Genes
Compared to A.thaliana Compared to B.rapa
Synteny Regions
SpeciesRegionMapped SpeciesMapped RegionNum. of Genewise
B.oleraceaC03:17189375..17780962 (-)A.thalianaChr4:11555186..12018492 (+)20
SpeciesRegionMapped SpeciesMapped RegionNum. of Genewise
B.oleraceaC03:17185827..17873007 (+)B.rapaA09:32314017..33579708 (+)37
Trplicated Block
BlockBest HitStartENDChromosomeSubgenomeNum. of Gene Pairs on Block
OAT4G0450022384112240865Chr4Subgenome_I143
 
@2012 Department of Genomics and Molecular Biology, Oil Crops Research Institute.


logo