Basic Information
Gene Model:Bol030527
Gene Family:Not classificated
Chromosome:C03
Scaffold:Scaffold000059
Sequence:
 | 
Gene Structure
Nucleotide Length:4326 bp
Transcript Length:1980 bp
Protein Length:659 aa
Strand:-
Location:C03: 17277804 : 17282129
Gene CDSs(21): 1-57 | 153-242 | 330-420 | 771-949 | 1030-1107 | 1209-1331 | 1398-1493 | 1572-1697 | 1785-1881 | 1967-2043 | 2147-2245 | 2343-2426 | 2516-2707 | 2783-2908 | 3202-3234 | 3318-3414 | 3509-3559 | 3644-3722 | 3810-3891 | 3990-4039 | 4254-4326 |
Protein Sequence Features
Interpro
DatabaseTermsIdentifierStartEndE-valueInterPro IDDescription
Gene3DG3DSA:3.40.50.1910no description 147 280 1.3e-34Not foundNot found
Gene3DG3DSA:3.40.50.2060no description 16 144 2.6e-34Not foundNot found
superfamilySSF56815Sec1/munc18-like (SM 14 652 1.1e-152IPR001619Sec1-like protein
Segsegseg 648 659 NANot foundNot found
Segsegseg 2 14 NANot foundNot found
Segsegseg 549 558 NANot foundNot found
HMMPantherPTHR11679VESICLE PROTEIN SORT 29 649 0IPR001619Sec1-like protein
HMMPantherPTHR11679:SF5PLANT SEC1 29 649 0Not foundNot found
HMMPfamPF00995Sec1 40 643 3.8e-77IPR001619Sec1-like protein
Gene Ontology
GO TermGO TypeDescription
GO:0006904 Biological Process vesicle docking during exocytosis
GO:0016192 Biological Process vesicle-mediated transport
Swiss-Prot
Best HitE_value Description
Q9SZ770.0SEC1B_ARATH Protein transport Sec1b OS=Arabidopsis thaliana GN=SEC1B PE=2 SV=2
TrEMBL
Best HitE_value Description
B9N3L80.0B9N3L8_POPTR Predicted protein OS=Populus trichocarpa GN=POPTRDRAFT_837074 PE=4 SV=1
KEGG
Best HitE_valueKOEC or Symbol Description
ppp:PHYPADRAFT_1788713e-28K12479VPS45vacuolar protein sorting-associated protein 45
Gene Cluster
Orthologs
OrthoMCL GroupSpeciesGene List
ORTHOMCL573(25 genes,8 taxa):Arabidopsis thalianaAT1G02010.1
ORTHOMCL573(25 genes,8 taxa):Arabidopsis thalianaAT1G12360.1
ORTHOMCL573(25 genes,8 taxa):Arabidopsis thalianaAT4G12120.1
ORTHOMCL573(25 genes,8 taxa):Brassica oleraceaBol010435
ORTHOMCL573(25 genes,8 taxa):Brassica oleraceaBol018489
ORTHOMCL573(25 genes,8 taxa):Brassica oleraceaBol020079
ORTHOMCL573(25 genes,8 taxa):Brassica oleraceaBol030527
ORTHOMCL573(25 genes,8 taxa):Brassica oleraceaBol031363
ORTHOMCL573(25 genes,8 taxa):Brassica rapaBra000761
ORTHOMCL573(25 genes,8 taxa):Brassica rapaBra019760
ORTHOMCL573(25 genes,8 taxa):Brassica rapaBra026974
ORTHOMCL573(25 genes,8 taxa):Brassica rapaBra029438
ORTHOMCL573(25 genes,8 taxa):Brassica rapaBra032660
ORTHOMCL573(25 genes,8 taxa):Vitis viniferaGSVIVT01016199001
ORTHOMCL573(25 genes,8 taxa):Vitis viniferaGSVIVT01026673001
ORTHOMCL573(25 genes,8 taxa):Vitis viniferaGSVIVT01027604001
ORTHOMCL573(25 genes,8 taxa):Oryza sativaOs04t0252400-01
ORTHOMCL573(25 genes,8 taxa):Oryza sativaOs06t0135900-01
ORTHOMCL573(25 genes,8 taxa):Populus trichocarpaPOPTR_0001s08020.1
ORTHOMCL573(25 genes,8 taxa):Populus trichocarpaPOPTR_0003s11540.1
ORTHOMCL573(25 genes,8 taxa):Populus trichocarpaPOPTR_0014s06490.1
ORTHOMCL573(25 genes,8 taxa):Sorghum bicolorSb04g015010.1
ORTHOMCL573(25 genes,8 taxa):Sorghum bicolorSb06g003780.1
ORTHOMCL573(25 genes,8 taxa):Sorghum bicolorSb10g002411.1
ORTHOMCL573(25 genes,8 taxa):Carica papayaevm.TU.supercontig_29.81
Tandem Duplication
ClusterGene Num.Gene List

The tandem genes of this gene was not detected with strict parameters, so there is no information collected in Bolbase.

Synteny Analysis
Synteny Genes
Compared to A.thaliana Compared to B.rapa
Synteny Regions
SpeciesRegionMapped SpeciesMapped RegionNum. of Genewise
B.oleraceaC03:17189375..17780962 (-)A.thalianaChr4:11555186..12018492 (+)20
SpeciesRegionMapped SpeciesMapped RegionNum. of Genewise
B.oleraceaC03:17185827..17873007 (+)B.rapaA09:32314017..33579708 (+)37
Trplicated Block
BlockBest HitStartENDChromosomeSubgenomeNum. of Gene Pairs on Block

Note: this gene was no corresponding triplicated genes.

 
@2012 Department of Genomics and Molecular Biology, Oil Crops Research Institute.


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