Basic Information
Gene Model:Bol030500
Gene Family:Protein Kinase Gene Families
Chromosome:C09
Scaffold:Scaffold000060
Sequence:
 | 
Gene Structure
Nucleotide Length:2510 bp
Transcript Length:1914 bp
Protein Length:637 aa
Strand:-
Location:C09: 33069932 : 33072441
Gene CDSs(8): 1-109 | 233-365 | 442-513 | 597-740 | 811-882 | 967-1026 | 1103-1200 | 1285-2510 |
Protein Sequence Features
Interpro
DatabaseTermsIdentifierStartEndE-valueInterPro IDDescription
HMMPfamPF00069Pkinase 308 503 1e-35IPR017442Serine/threonine-protein kinase-like domain
HMMPfamPF00560LRR_1 173 196 1.5IPR001611Leucine-rich repeat
HMMPfamPF00560LRR_1 149 171 0.0013IPR001611Leucine-rich repeat
HMMPfamPF00560LRR_1 125 147 0.0063IPR001611Leucine-rich repeat
HMMPfamPF00560LRR_1 101 123 0.025IPR001611Leucine-rich repeat
HMMPfamPF08263LRRNT_2 33 73 6.1e-20IPR013210Leucine-rich repeat, N-terminal
superfamilySSF56112Protein kinase-like 278 588 1.1e-76IPR011009Protein kinase-like domain
superfamilySSF52058L domain-like 30 213 8.3e-40Not foundNot found
Segsegseg 528 545 NANot foundNot found
Segsegseg 1 7 NANot foundNot found
Segsegseg 14 30 NANot foundNot found
ProfileScanPS50011PROTEIN_KINASE_DOM 308 590 34.054IPR000719Protein kinase, catalytic domain
HMMSmartSM00219no description 308 580 5.8e-30IPR020635Tyrosine-protein kinase, subgroup, catalytic domain
HMMPantherPTHR23258:SF423RECEPTOR-LIKE PROTEI 57 634 3e-286Not foundNot found
HMMPantherPTHR23258SERINE-THREONINE PRO 57 634 3e-286Not foundNot found
HMMSmartSM00220no description 308 580 3.1e-33IPR002290Serine/threonine-protein kinase domain
PatternScanPS00108PROTEIN_KINASE_ST 427 439 NAIPR008271Serine/threonine-protein kinase, active site
PatternScanPS00107PROTEIN_KINASE_ATP 314 336 NAIPR017441Protein kinase, ATP binding site
Gene3DG3DSA:3.30.200.20no description 262 384 1.9e-21Not foundNot found
Gene3DG3DSA:1.10.510.10no description 387 582 6.1e-48Not foundNot found
Gene3DG3DSA:3.80.10.10no description 30 197 1.3e-41Not foundNot found
Gene Ontology
GO TermGO TypeDescription
GO:0004672 Molecular Function protein kinase activity
GO:0004674 Molecular Function protein serine/threonine kinase activity
GO:0005515 Molecular Function protein binding
GO:0005524 Molecular Function ATP binding
GO:0006468 Biological Process protein phosphorylation
Swiss-Prot
Best HitE_value Description
Q0WVM40.0Y2239_ARATH Probable LRR receptor-like serine/threonine-protein kinase At2g23950 OS=Arabidopsis thaliana GN=At2g23950 PE=2 SV=1
TrEMBL
Best HitE_value Description
Q9LFS40.0Q9LFS4_ARATH Leucine-rich repeat receptor-like protein kinase OS=Arabidopsis thaliana GN=F1N13_140 PE=2 SV=1
KEGG
Best HitE_valueKOEC or Symbol Description
ath:AT1G718301e-166K13418SERK1--
Gene Cluster
Orthologs
OrthoMCL GroupSpeciesGene List
ORTHOMCL56(89 genes,8 taxa):Arabidopsis thalianaAT1G34210.1
ORTHOMCL56(89 genes,8 taxa):Arabidopsis thalianaAT1G60800.1
ORTHOMCL56(89 genes,8 taxa):Arabidopsis thalianaAT1G71830.1
ORTHOMCL56(89 genes,8 taxa):Arabidopsis thalianaAT2G13790.1
ORTHOMCL56(89 genes,8 taxa):Arabidopsis thalianaAT2G13800.1
ORTHOMCL56(89 genes,8 taxa):Arabidopsis thalianaAT2G23950.1
ORTHOMCL56(89 genes,8 taxa):Arabidopsis thalianaAT3G25560.2
ORTHOMCL56(89 genes,8 taxa):Arabidopsis thalianaAT4G30520.1
ORTHOMCL56(89 genes,8 taxa):Arabidopsis thalianaAT4G33430.1
ORTHOMCL56(89 genes,8 taxa):Arabidopsis thalianaAT5G16000.1
ORTHOMCL56(89 genes,8 taxa):Arabidopsis thalianaAT5G45780.1
ORTHOMCL56(89 genes,8 taxa):Brassica oleraceaBol003499
ORTHOMCL56(89 genes,8 taxa):Brassica oleraceaBol006306
ORTHOMCL56(89 genes,8 taxa):Brassica oleraceaBol007388
ORTHOMCL56(89 genes,8 taxa):Brassica oleraceaBol013579
ORTHOMCL56(89 genes,8 taxa):Brassica oleraceaBol017542
ORTHOMCL56(89 genes,8 taxa):Brassica oleraceaBol030500
ORTHOMCL56(89 genes,8 taxa):Brassica oleraceaBol033816
ORTHOMCL56(89 genes,8 taxa):Brassica oleraceaBol034378
ORTHOMCL56(89 genes,8 taxa):Brassica oleraceaBol040099
ORTHOMCL56(89 genes,8 taxa):Brassica oleraceaBol041959
ORTHOMCL56(89 genes,8 taxa):Brassica oleraceaBol042730
ORTHOMCL56(89 genes,8 taxa):Brassica rapaBra003911
ORTHOMCL56(89 genes,8 taxa):Brassica rapaBra006335
ORTHOMCL56(89 genes,8 taxa):Brassica rapaBra008659
ORTHOMCL56(89 genes,8 taxa):Brassica rapaBra011439
ORTHOMCL56(89 genes,8 taxa):Brassica rapaBra013136
ORTHOMCL56(89 genes,8 taxa):Brassica rapaBra016112
ORTHOMCL56(89 genes,8 taxa):Brassica rapaBra024069
ORTHOMCL56(89 genes,8 taxa):Brassica rapaBra025056
ORTHOMCL56(89 genes,8 taxa):Brassica rapaBra025145
ORTHOMCL56(89 genes,8 taxa):Brassica rapaBra031479
ORTHOMCL56(89 genes,8 taxa):Brassica rapaBra032125
ORTHOMCL56(89 genes,8 taxa):Brassica rapaBra032128
ORTHOMCL56(89 genes,8 taxa):Brassica rapaBra032133
ORTHOMCL56(89 genes,8 taxa):Brassica rapaBra034562
ORTHOMCL56(89 genes,8 taxa):Brassica rapaBra037006
ORTHOMCL56(89 genes,8 taxa):Brassica rapaBra041056
ORTHOMCL56(89 genes,8 taxa):Vitis viniferaGSVIVT01001600001
ORTHOMCL56(89 genes,8 taxa):Vitis viniferaGSVIVT01010159001
ORTHOMCL56(89 genes,8 taxa):Vitis viniferaGSVIVT01013787001
ORTHOMCL56(89 genes,8 taxa):Vitis viniferaGSVIVT01021240001
ORTHOMCL56(89 genes,8 taxa):Vitis viniferaGSVIVT01022209001
ORTHOMCL56(89 genes,8 taxa):Vitis viniferaGSVIVT01023710001
ORTHOMCL56(89 genes,8 taxa):Vitis viniferaGSVIVT01029797001
ORTHOMCL56(89 genes,8 taxa):Vitis viniferaGSVIVT01029798001
ORTHOMCL56(89 genes,8 taxa):Vitis viniferaGSVIVT01029816001
ORTHOMCL56(89 genes,8 taxa):Vitis viniferaGSVIVT01036495001
ORTHOMCL56(89 genes,8 taxa):Oryza sativaOs01t0171000-01
ORTHOMCL56(89 genes,8 taxa):Oryza sativaOs02t0236100-01
ORTHOMCL56(89 genes,8 taxa):Oryza sativaOs04t0457800-01
ORTHOMCL56(89 genes,8 taxa):Oryza sativaOs06t0225300-01
ORTHOMCL56(89 genes,8 taxa):Oryza sativaOs06t0225300-02
ORTHOMCL56(89 genes,8 taxa):Oryza sativaOs06t0274500-01
ORTHOMCL56(89 genes,8 taxa):Oryza sativaOs08t0174700-01
ORTHOMCL56(89 genes,8 taxa):Oryza sativaOs08t0442700-01
ORTHOMCL56(89 genes,8 taxa):Populus trichocarpaPOPTR_0001s21420.1
ORTHOMCL56(89 genes,8 taxa):Populus trichocarpaPOPTR_0003s01740.1
ORTHOMCL56(89 genes,8 taxa):Populus trichocarpaPOPTR_0004s05780.1
ORTHOMCL56(89 genes,8 taxa):Populus trichocarpaPOPTR_0004s10790.1
ORTHOMCL56(89 genes,8 taxa):Populus trichocarpaPOPTR_0004s10790.2
ORTHOMCL56(89 genes,8 taxa):Populus trichocarpaPOPTR_0005s08500.1
ORTHOMCL56(89 genes,8 taxa):Populus trichocarpaPOPTR_0006s19320.1
ORTHOMCL56(89 genes,8 taxa):Populus trichocarpaPOPTR_0007s06460.1
ORTHOMCL56(89 genes,8 taxa):Populus trichocarpaPOPTR_0008s10970.1
ORTHOMCL56(89 genes,8 taxa):Populus trichocarpaPOPTR_0008s19310.1
ORTHOMCL56(89 genes,8 taxa):Populus trichocarpaPOPTR_0008s19310.2
ORTHOMCL56(89 genes,8 taxa):Populus trichocarpaPOPTR_0010s05300.1
ORTHOMCL56(89 genes,8 taxa):Populus trichocarpaPOPTR_0010s05300.2
ORTHOMCL56(89 genes,8 taxa):Populus trichocarpaPOPTR_0010s14410.1
ORTHOMCL56(89 genes,8 taxa):Populus trichocarpaPOPTR_0011s07120.1
ORTHOMCL56(89 genes,8 taxa):Populus trichocarpaPOPTR_0013s12150.1
ORTHOMCL56(89 genes,8 taxa):Populus trichocarpaPOPTR_0017s14360.1
ORTHOMCL56(89 genes,8 taxa):Populus trichocarpaPOPTR_0018s11030.1
ORTHOMCL56(89 genes,8 taxa):Populus trichocarpaPOPTR_0019s11740.1
ORTHOMCL56(89 genes,8 taxa):Sorghum bicolorSb03g004450.1
ORTHOMCL56(89 genes,8 taxa):Sorghum bicolorSb04g008570.1
ORTHOMCL56(89 genes,8 taxa):Sorghum bicolorSb04g023810.1
ORTHOMCL56(89 genes,8 taxa):Sorghum bicolorSb04g029170.1
ORTHOMCL56(89 genes,8 taxa):Sorghum bicolorSb06g018760.1
ORTHOMCL56(89 genes,8 taxa):Sorghum bicolorSb07g004750.1
ORTHOMCL56(89 genes,8 taxa):Sorghum bicolorSb07g021820.1
ORTHOMCL56(89 genes,8 taxa):Sorghum bicolorSb10g010010.1
ORTHOMCL56(89 genes,8 taxa):Carica papayaevm.TU.supercontig_199.8
ORTHOMCL56(89 genes,8 taxa):Carica papayaevm.TU.supercontig_386.3
ORTHOMCL56(89 genes,8 taxa):Carica papayaevm.TU.supercontig_53.14
ORTHOMCL56(89 genes,8 taxa):Carica papayaevm.TU.supercontig_66.111
ORTHOMCL56(89 genes,8 taxa):Carica papayaevm.TU.supercontig_69.76
ORTHOMCL56(89 genes,8 taxa):Carica papayaevm.TU.supercontig_70.4
Tandem Duplication
ClusterGene Num.Gene List

The tandem genes of this gene was not detected with strict parameters, so there is no information collected in Bolbase.

Synteny Analysis
Synteny Genes
Compared to A.thaliana Compared to B.rapa
Synteny Regions
SpeciesRegionMapped SpeciesMapped RegionNum. of Genewise
B.oleraceaC09:31552526..33899531 (-)A.thalianaChr5:4691006..6066186 (+)222
SpeciesRegionMapped SpeciesMapped RegionNum. of Genewise
B.oleraceaC09:32272854..33899531 (+)B.rapaA10:10299..911027 (+)162
Trplicated Block
BlockBest HitStartENDChromosomeSubgenomeNum. of Gene Pairs on Block
RAT5G1600052241435227288Chr5Subgenome_III(LF)389
 
@2012 Department of Genomics and Molecular Biology, Oil Crops Research Institute.


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