Basic Information
Gene Model:Bol030487
Gene Family:Transcription Factor Families
Chromosome:C09
Scaffold:Scaffold000060
Sequence:
 | 
Gene Structure
Nucleotide Length:564 bp
Transcript Length:564 bp
Protein Length:187 aa
Strand:-
Location:C09: 33147459 : 33148022
Gene CDSs(1): 1-564 |
Protein Sequence Features
Interpro
DatabaseTermsIdentifierStartEndE-valueInterPro IDDescription
HMMSmartSM00338no description 68 132 2.6e-14IPR004827Basic-leucine zipper (bZIP) transcription factor
Coilcoilcoiled-coil 95 130 NANot foundNot found
Segsegseg 21 41 NANot foundNot found
PatternScanPS00036BZIP_BASIC 75 90 NAIPR004827Basic-leucine zipper (bZIP) transcription factor
ProfileScanPS50217BZIP 70 133 10.760IPR004827Basic-leucine zipper (bZIP) transcription factor
HMMPfamPF00170bZIP_1 72 131 2.7e-11IPR011616bZIP transcription factor, bZIP-1
HMMPantherPTHR22952CAMP-RESPONSE ELEMEN 38 114 8.2e-06Not foundNot found
HMMPantherPTHR22952:SF10CYCLIC-AMP-DEPENDENT 38 114 8.2e-06Not foundNot found
Gene Ontology
GO TermGO TypeDescription
GO:0003700 Molecular Function sequence-specific DNA binding transcription factor activity
GO:0006355 Biological Process regulation of transcription, DNA-dependent
GO:0043565 Molecular Function sequence-specific DNA binding
GO:0046983 Molecular Function protein dimerization activity
Swiss-Prot
Best HitE_value Description
P240681e-09OCS1_MAIZE Ocs element-binding factor 1 OS=Zea mays GN=OBF1 PE=2 SV=2
TrEMBL
Best HitE_value Description
Q9LFU32e-61Q9LFU3_ARATH BZIP DNA-binding protein-like OS=Arabidopsis thaliana GN=F14F8_210 PE=2 SV=1
KEGG
Best HitE_valueKOEC or Symbol Description
vvi:1002540833e-12K04371ERK1_2extracellular signal-regulated kinase 1/2
Gene Cluster
Orthologs
OrthoMCL GroupSpeciesGene List
ORTHOMCL26361(2 genes,2 taxa):Brassica oleraceaBol030487
ORTHOMCL26361(2 genes,2 taxa):Brassica rapaBra008670
Tandem Duplication
ClusterGene Num.Gene List

The tandem genes of this gene was not detected with strict parameters, so there is no information collected in Bolbase.

Synteny Analysis
Synteny Genes
Compared to A.thaliana Compared to B.rapa
Synteny Regions
SpeciesRegionMapped SpeciesMapped RegionNum. of Genewise
B.oleraceaC09:31552526..33899531 (-)A.thalianaChr5:4691006..6066186 (+)222
SpeciesRegionMapped SpeciesMapped RegionNum. of Genewise
B.oleraceaC09:32272854..33899531 (+)B.rapaA10:10299..911027 (+)162
Trplicated Block
BlockBest HitStartENDChromosomeSubgenomeNum. of Gene Pairs on Block
RAT5G1583051685435169361Chr5Subgenome_III(LF)389
 
@2012 Department of Genomics and Molecular Biology, Oil Crops Research Institute.


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