Basic Information
Gene Model:Bol030007
Gene Family:Transcription Factor Families
Chromosome:C04
Scaffold:Scaffold000062
Sequence:
 | 
Gene Structure
Nucleotide Length:2815 bp
Transcript Length:2301 bp
Protein Length:766 aa
Strand:+
Location:C04: 1562755 : 1565569
Gene CDSs(4): 1-912 | 1254-1640 | 1722-1842 | 1935-2815 |
Protein Sequence Features
Interpro
DatabaseTermsIdentifierStartEndE-valueInterPro IDDescription
superfamilySSF54277CAD & PB1 domains 661 748 4.1e-25Not foundNot found
HMMPfamPF00564PB1 666 748 5.3e-24IPR000270Octicosapeptide/Phox/Bem1p
HMMPfamPF02042RWP-RK 448 499 7.8e-34IPR003035Plant regulator RWP-RK
HMMSmartSM00666no description 666 748 6.6e-24IPR000270Octicosapeptide/Phox/Bem1p
Segsegseg 353 364 NANot foundNot found
Segsegseg 32 49 NANot foundNot found
Segsegseg 144 159 NANot foundNot found
Gene Ontology
GO TermGO TypeDescription

Note: this gene was not detected its best hit in Swiss-Prot database.

Swiss-Prot
Best HitE_value Description

Note: best hit of this gene was not detected in Swiss-Prot database.

TrEMBL
Best HitE_value Description
O228640.0O22864_ARATH Putative uncharacterized protein At2g43500 OS=Arabidopsis thaliana GN=At2g43500 PE=4 SV=1
KEGG
Best HitE_valueKOEC or Symbol Description

Note: this gene was not detected its best hit in KEGG database.

Gene Cluster
Orthologs
OrthoMCL GroupSpeciesGene List
ORTHOMCL1526(17 genes,8 taxa):Arabidopsis thalianaAT2G43500.1
ORTHOMCL1526(17 genes,8 taxa):Arabidopsis thalianaAT3G59580.1
ORTHOMCL1526(17 genes,8 taxa):Brassica oleraceaBol023805
ORTHOMCL1526(17 genes,8 taxa):Brassica oleraceaBol030007
ORTHOMCL1526(17 genes,8 taxa):Brassica rapaBra000307
ORTHOMCL1526(17 genes,8 taxa):Brassica rapaBra000308
ORTHOMCL1526(17 genes,8 taxa):Brassica rapaBra003382
ORTHOMCL1526(17 genes,8 taxa):Brassica rapaBra004767
ORTHOMCL1526(17 genes,8 taxa):Brassica rapaBra037711
ORTHOMCL1526(17 genes,8 taxa):Vitis viniferaGSVIVT01038090001
ORTHOMCL1526(17 genes,8 taxa):Oryza sativaOs04t0495800-01
ORTHOMCL1526(17 genes,8 taxa):Oryza sativaOs04t0495800-02
ORTHOMCL1526(17 genes,8 taxa):Populus trichocarpaPOPTR_0007s01530.1
ORTHOMCL1526(17 genes,8 taxa):Populus trichocarpaPOPTR_0017s04980.1
ORTHOMCL1526(17 genes,8 taxa):Populus trichocarpaPOPTR_0017s04980.2
ORTHOMCL1526(17 genes,8 taxa):Sorghum bicolorSb06g021370.1
ORTHOMCL1526(17 genes,8 taxa):Carica papayaevm.TU.supercontig_9.317
Tandem Duplication
ClusterGene Num.Gene List

The tandem genes of this gene was not detected with strict parameters, so there is no information collected in Bolbase.

Synteny Analysis
Synteny Genes
Compared to A.thaliana Compared to B.rapa
Synteny Regions
SpeciesRegionMapped SpeciesMapped RegionNum. of Genewise
B.oleraceaC04:999867..3283087 (+)A.thalianaChr3:21827978..22787972 (+)65
SpeciesRegionMapped SpeciesMapped RegionNum. of Genewise
B.oleraceaC04:34509..3935188 (+)B.rapaA09:12250169..14575172 (+)89
Trplicated Block
BlockBest HitStartENDChromosomeSubgenomeNum. of Gene Pairs on Block
JAT2G435001806192518066639Chr2Subgenome_III(LF)512
 
@2012 Department of Genomics and Molecular Biology, Oil Crops Research Institute.


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