Basic Information
Gene Model:Bol029984
Gene Family:Not classificated
Chromosome:C04
Scaffold:Scaffold000062
Sequence:
 | 
Gene Structure
Nucleotide Length:1471 bp
Transcript Length:891 bp
Protein Length:296 aa
Strand:+
Location:C04: 1401007 : 1402477
Gene CDSs(7): 1-110 | 198-247 | 350-388 | 464-492 | 626-688 | 782-882 | 973-1471 |
Protein Sequence Features
Interpro
DatabaseTermsIdentifierStartEndE-valueInterPro IDDescription
HMMPIRPIRSF006232Pirin 12 289 8.4e-119IPR012093Pirin
superfamilySSF51182RmlC-like cupins 10 295 2.7e-85IPR011051Cupin, RmlC-type
HMMPfamPF05726Pirin_C 176 286 4.4e-49IPR008778Pirin, C-terminal
HMMPfamPF02678Pirin 28 123 2.1e-56IPR003829Pirin, N-terminal
HMMPantherPTHR13903PIRIN-RELATED 62 296 9.2e-100IPR012093Pirin
Segsegseg 2 13 NANot foundNot found
Gene Ontology
GO TermGO TypeDescription

Note: this gene was not detected its best hit in Swiss-Prot database.

Swiss-Prot
Best HitE_value Description
Q9ZW821e-164PIRL2_ARATH Pirin-like protein At2g43120 OS=Arabidopsis thaliana GN=At2g43120 PE=2 SV=3
TrEMBL
Best HitE_value Description
A9PG771e-125A9PG77_POPTR Putative uncharacterized protein OS=Populus trichocarpa PE=2 SV=1
KEGG
Best HitE_valueKOEC or Symbol Description
ath:AT2G431201e-164K06911K06911--
Gene Cluster
Orthologs
OrthoMCL GroupSpeciesGene List
ORTHOMCL4750(11 genes,8 taxa):Arabidopsis thalianaAT2G43120.1
ORTHOMCL4750(11 genes,8 taxa):Brassica oleraceaBol029442
ORTHOMCL4750(11 genes,8 taxa):Brassica oleraceaBol029984
ORTHOMCL4750(11 genes,8 taxa):Brassica rapaBra000289
ORTHOMCL4750(11 genes,8 taxa):Brassica rapaBra004746
ORTHOMCL4750(11 genes,8 taxa):Vitis viniferaGSVIVT01031671001
ORTHOMCL4750(11 genes,8 taxa):Oryza sativaOs03t0845000-01
ORTHOMCL4750(11 genes,8 taxa):Populus trichocarpaPOPTR_0002s23290.1
ORTHOMCL4750(11 genes,8 taxa):Populus trichocarpaPOPTR_0014s14780.1
ORTHOMCL4750(11 genes,8 taxa):Sorghum bicolorSb01g001470.1
ORTHOMCL4750(11 genes,8 taxa):Carica papayaevm.TU.supercontig_90.51
Tandem Duplication
ClusterGene Num.Gene List

The tandem genes of this gene was not detected with strict parameters, so there is no information collected in Bolbase.

Synteny Analysis
Synteny Genes
Compared to A.thaliana Compared to B.rapa
Synteny Regions
SpeciesRegionMapped SpeciesMapped RegionNum. of Genewise
B.oleraceaC04:999867..3283087 (+)A.thalianaChr3:21827978..22787972 (+)65
SpeciesRegionMapped SpeciesMapped RegionNum. of Genewise
B.oleraceaC04:34509..3935188 (+)B.rapaA09:12250169..14575172 (+)89
Trplicated Block
BlockBest HitStartENDChromosomeSubgenomeNum. of Gene Pairs on Block
JAT2G431201792726417928984Chr2Subgenome_III(LF)512
 
@2012 Department of Genomics and Molecular Biology, Oil Crops Research Institute.


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