Basic Information
Gene Model:Bol029867
Gene Family:Not classificated
Chromosome:C03
Scaffold:Scaffold000063
Sequence:
 | 
Gene Structure
Nucleotide Length:4245 bp
Transcript Length:1701 bp
Protein Length:566 aa
Strand:-
Location:C03: 48454444 : 48458688
Gene CDSs(3): 1-472 | 549-1468 | 3937-4245 |
Protein Sequence Features
Interpro
DatabaseTermsIdentifierStartEndE-valueInterPro IDDescription
Segsegseg 533 544 NANot foundNot found
Segsegseg 381 395 NANot foundNot found
Segsegseg 420 435 NANot foundNot found
Segsegseg 208 217 NANot foundNot found
Segsegseg 236 256 NANot foundNot found
superfamilySSF103473MFS general substrat 1 550 2.8e-22IPR016196Major facilitator superfamily, general substrate transporter
HMMPantherPTHR21576UNCHARACTERIZED NODU 1 564 1.5e-213Not foundNot found
HMMPfamPF06813Nodulin-like 7 253 5.8e-143IPR010658Nodulin-like
Gene Ontology
GO TermGO TypeDescription

Note: this gene was not detected its best hit in Swiss-Prot database.

Swiss-Prot
Best HitE_value Description
Q6CGU89e-07MCH1_YARLI Probable transporter MCH1 OS=Yarrowia lipolytica GN=MCH1 PE=3 SV=1
TrEMBL
Best HitE_value Description
Q8H1320.0Q8H132_ARATH Putative uncharacterized protein At4g19450 OS=Arabidopsis thaliana GN=At4g19450 PE=2 SV=1
KEGG
Best HitE_valueKOEC or Symbol Description

Note: this gene was not detected its best hit in KEGG database.

Gene Cluster
Orthologs
OrthoMCL GroupSpeciesGene List
ORTHOMCL485(27 genes,8 taxa):Arabidopsis thalianaAT1G31470.1
ORTHOMCL485(27 genes,8 taxa):Arabidopsis thalianaAT3G01630.1
ORTHOMCL485(27 genes,8 taxa):Arabidopsis thalianaAT4G19450.1
ORTHOMCL485(27 genes,8 taxa):Arabidopsis thalianaAT5G45275.1
ORTHOMCL485(27 genes,8 taxa):Brassica oleraceaBol000471
ORTHOMCL485(27 genes,8 taxa):Brassica oleraceaBol000969
ORTHOMCL485(27 genes,8 taxa):Brassica oleraceaBol003705
ORTHOMCL485(27 genes,8 taxa):Brassica oleraceaBol005622
ORTHOMCL485(27 genes,8 taxa):Brassica oleraceaBol011675
ORTHOMCL485(27 genes,8 taxa):Brassica oleraceaBol022863
ORTHOMCL485(27 genes,8 taxa):Brassica oleraceaBol029867
ORTHOMCL485(27 genes,8 taxa):Brassica rapaBra012543
ORTHOMCL485(27 genes,8 taxa):Brassica rapaBra013398
ORTHOMCL485(27 genes,8 taxa):Brassica rapaBra020961
ORTHOMCL485(27 genes,8 taxa):Brassica rapaBra021958
ORTHOMCL485(27 genes,8 taxa):Brassica rapaBra023189
ORTHOMCL485(27 genes,8 taxa):Brassica rapaBra025086
ORTHOMCL485(27 genes,8 taxa):Brassica rapaBra039106
ORTHOMCL485(27 genes,8 taxa):Vitis viniferaGSVIVT01036919001
ORTHOMCL485(27 genes,8 taxa):Oryza sativaOs11t0107400-01
ORTHOMCL485(27 genes,8 taxa):Oryza sativaOs12t0106500-00
ORTHOMCL485(27 genes,8 taxa):Populus trichocarpaPOPTR_0001s01040.1
ORTHOMCL485(27 genes,8 taxa):Populus trichocarpaPOPTR_0003s10470.1
ORTHOMCL485(27 genes,8 taxa):Sorghum bicolorSb05g000610.1
ORTHOMCL485(27 genes,8 taxa):Sorghum bicolorSb08g000640.1
ORTHOMCL485(27 genes,8 taxa):Carica papayaevm.TU.supercontig_3403.1
ORTHOMCL485(27 genes,8 taxa):Carica papayaevm.TU.supercontig_73.58
Tandem Duplication
ClusterGene Num.Gene List

The tandem genes of this gene was not detected with strict parameters, so there is no information collected in Bolbase.

Synteny Analysis
Synteny Genes
Compared to A.thaliana Compared to B.rapa
Synteny Regions
SpeciesRegionMapped SpeciesMapped RegionNum. of Genewise
B.oleraceaC03:47839399..49442993 (-)A.thalianaChr4:10087343..10839142 (+)54
SpeciesRegionMapped SpeciesMapped RegionNum. of Genewise
B.oleraceaC03:48355649..49423692 (+)B.rapaA09:29932349..30512082 (-)12
Trplicated Block
BlockBest HitStartENDChromosomeSubgenomeNum. of Gene Pairs on Block
UAT4G194501060645310609335Chr4Subgenome_II220
 
@2012 Department of Genomics and Molecular Biology, Oil Crops Research Institute.


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