Basic Information
Gene Model:Bol029816
Gene Family:Not classificated
Chromosome:Cun
Scaffold:Scaffold000064
Sequence:
 | 
Gene Structure
Nucleotide Length:510 bp
Transcript Length:510 bp
Protein Length:169 aa
Strand:+
Location:Scaffold000064: 1791307 : 1791816
Gene CDSs(1): 1-510 |
Protein Sequence Features
Interpro
DatabaseTermsIdentifierStartEndE-valueInterPro IDDescription
Segsegseg 121 130 NANot foundNot found
Gene Ontology
GO TermGO TypeDescription

Note: this gene was not detected its best hit in Swiss-Prot database.

Swiss-Prot
Best HitE_value Description
Q9SUM52e-44Y4318_ARATH Uncharacterized protein At4g30180 OS=Arabidopsis thaliana GN=At4g30180 PE=2 SV=1
TrEMBL
Best HitE_value Description
B3H6922e-65B3H692_ARATH Uncharacterized protein At2g18969.1 OS=Arabidopsis thaliana GN=At2g18969 PE=4 SV=1
KEGG
Best HitE_valueKOEC or Symbol Description

Note: this gene was not detected its best hit in KEGG database.

Gene Cluster
Orthologs
OrthoMCL GroupSpeciesGene List
ORTHOMCL13941(5 genes,5 taxa):Arabidopsis thalianaAT2G18969.1
ORTHOMCL13941(5 genes,5 taxa):Brassica oleraceaBol029816
ORTHOMCL13941(5 genes,5 taxa):Brassica rapaBra038558
ORTHOMCL13941(5 genes,5 taxa):Populus trichocarpaPOPTR_0018s09740.1
ORTHOMCL13941(5 genes,5 taxa):Carica papayaevm.TU.supercontig_1377.2
Tandem Duplication
ClusterGene Num.Gene List

The tandem genes of this gene was not detected with strict parameters, so there is no information collected in Bolbase.

Synteny Analysis
Synteny Genes
Note: This gene was not anchored on pseudo-chromosomes.
Synteny Regions
SpeciesRegionMapped SpeciesMapped RegionNum. of Genewise

Note: this gene was not anchored on syntenic regions compared to A.thaliana genome.

SpeciesRegionMapped SpeciesMapped RegionNum. of Genewise

Note: this gene was not anchored on syntenic regions compared to B.rapa genome.

Trplicated Block
BlockBest HitStartENDChromosomeSubgenomeNum. of Gene Pairs on Block

Note: this gene was no corresponding triplicated genes.

 
@2012 Department of Genomics and Molecular Biology, Oil Crops Research Institute.


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