Basic Information
Gene Model:Bol029805
Gene Family:Not classificated
Chromosome:Cun
Scaffold:Scaffold000064
Sequence:
 | 
Gene Structure
Nucleotide Length:3253 bp
Transcript Length:2448 bp
Protein Length:815 aa
Strand:+
Location:Scaffold000064: 1644595 : 1647847
Gene CDSs(10): 1-167 | 248-392 | 461-855 | 940-1035 | 1112-1184 | 1363-1648 | 1735-2060 | 2147-2414 | 2481-2762 | 2844-3253 |
Protein Sequence Features
Interpro
DatabaseTermsIdentifierStartEndE-valueInterPro IDDescription
PatternScanPS00138SUBTILASE_SER 594 604 NAIPR000209Peptidase S8/S53, subtilisin/kexin/sedolisin
PatternScanPS00136SUBTILASE_ASP 156 167 NAIPR000209Peptidase S8/S53, subtilisin/kexin/sedolisin
HMMPantherPTHR10795:SF17SUBTILISIN-LIKE PROT 42 809 1.1e-266Not foundNot found
HMMPantherPTHR10795SUBTILISIN/KEXIN-REL 42 809 1.1e-266IPR015500Peptidase S8, subtilisin-related
Gene3DG3DSA:3.40.50.200no description 147 672 1.1e-64IPR000209Peptidase S8/S53, subtilisin/kexin/sedolisin
superfamilySSF54897Protease propeptides 19 126 8.6e-08IPR009020Proteinase inhibitor, propeptide
superfamilySSF52743Subtilisin-like 124 676 7.4e-73IPR000209Peptidase S8/S53, subtilisin/kexin/sedolisin
Segsegseg 283 296 NANot foundNot found
Segsegseg 206 218 NANot foundNot found
HMMPfamPF06280DUF1034 697 809 4.1e-38IPR010435Peptidase S8A, DUF1034 C-terminal
HMMPfamPF00082Peptidase_S8 136 663 3.7e-24IPR000209Peptidase S8/S53, subtilisin/kexin/sedolisin
HMMPfamPF02225PA 389 502 3.8e-16IPR003137Protease-associated PA
HMMPfamPF05922Inhibitor_I9 20 126 2.8e-13IPR010259Proteinase inhibitor I9, subtilisin propeptide
Gene Ontology
GO TermGO TypeDescription
GO:0004252 Molecular Function serine-type endopeptidase activity
GO:0005618 Cellular Component cell wall
GO:0006508 Biological Process proteolysis
GO:0016020 Cellular Component membrane
GO:0042802 Molecular Function identical protein binding
GO:0043086 Biological Process negative regulation of catalytic activity
Swiss-Prot
Best HitE_value Description
O653512e-95SUBL_ARATH Subtilisin-like protease OS=Arabidopsis thaliana GN=ARA12 PE=1 SV=1
TrEMBL
Best HitE_value Description
B2Y4N70.0B2Y4N7_ARAHA Putative subtilase family protein OS=Arabidopsis halleri subsp. halleri GN=17L07.9 PE=3 SV=1
KEGG
Best HitE_valueKOEC or Symbol Description

Note: this gene was not detected its best hit in KEGG database.

Gene Cluster
Orthologs
OrthoMCL GroupSpeciesGene List
ORTHOMCL322(33 genes,8 taxa):Arabidopsis thalianaAT1G30600.1
ORTHOMCL322(33 genes,8 taxa):Arabidopsis thalianaAT2G19170.1
ORTHOMCL322(33 genes,8 taxa):Arabidopsis thalianaAT4G20430.1
ORTHOMCL322(33 genes,8 taxa):Arabidopsis thalianaAT4G30020.1
ORTHOMCL322(33 genes,8 taxa):Arabidopsis thalianaAT5G44530.1
ORTHOMCL322(33 genes,8 taxa):Brassica oleraceaBol006370
ORTHOMCL322(33 genes,8 taxa):Brassica oleraceaBol014603
ORTHOMCL322(33 genes,8 taxa):Brassica oleraceaBol020964
ORTHOMCL322(33 genes,8 taxa):Brassica oleraceaBol022689
ORTHOMCL322(33 genes,8 taxa):Brassica oleraceaBol028350
ORTHOMCL322(33 genes,8 taxa):Brassica oleraceaBol029805
ORTHOMCL322(33 genes,8 taxa):Brassica oleraceaBol033631
ORTHOMCL322(33 genes,8 taxa):Brassica rapaBra011160
ORTHOMCL322(33 genes,8 taxa):Brassica rapaBra013464
ORTHOMCL322(33 genes,8 taxa):Brassica rapaBra024112
ORTHOMCL322(33 genes,8 taxa):Brassica rapaBra032407
ORTHOMCL322(33 genes,8 taxa):Brassica rapaBra033749
ORTHOMCL322(33 genes,8 taxa):Brassica rapaBra036728
ORTHOMCL322(33 genes,8 taxa):Brassica rapaBra038844
ORTHOMCL322(33 genes,8 taxa):Vitis viniferaGSVIVT01004808001
ORTHOMCL322(33 genes,8 taxa):Vitis viniferaGSVIVT01010871001
ORTHOMCL322(33 genes,8 taxa):Vitis viniferaGSVIVT01037948001
ORTHOMCL322(33 genes,8 taxa):Oryza sativaOs01t0769200-01
ORTHOMCL322(33 genes,8 taxa):Oryza sativaOs06t0700000-01
ORTHOMCL322(33 genes,8 taxa):Populus trichocarpaPOPTR_0001s15120.1
ORTHOMCL322(33 genes,8 taxa):Populus trichocarpaPOPTR_0001s43080.1
ORTHOMCL322(33 genes,8 taxa):Populus trichocarpaPOPTR_0006s07580.1
ORTHOMCL322(33 genes,8 taxa):Populus trichocarpaPOPTR_0011s15890.1
ORTHOMCL322(33 genes,8 taxa):Populus trichocarpaPOPTR_0018s14020.1
ORTHOMCL322(33 genes,8 taxa):Populus trichocarpaPOPTR_0018s14020.2
ORTHOMCL322(33 genes,8 taxa):Sorghum bicolorSb03g035770.1
ORTHOMCL322(33 genes,8 taxa):Sorghum bicolorSb10g028870.1
ORTHOMCL322(33 genes,8 taxa):Carica papayaevm.TU.supercontig_95.18
Tandem Duplication
ClusterGene Num.Gene List

The tandem genes of this gene was not detected with strict parameters, so there is no information collected in Bolbase.

Synteny Analysis
Synteny Genes
Note: This gene was not anchored on pseudo-chromosomes.
Synteny Regions
SpeciesRegionMapped SpeciesMapped RegionNum. of Genewise

Note: this gene was not anchored on syntenic regions compared to A.thaliana genome.

SpeciesRegionMapped SpeciesMapped RegionNum. of Genewise

Note: this gene was not anchored on syntenic regions compared to B.rapa genome.

Trplicated Block
BlockBest HitStartENDChromosomeSubgenomeNum. of Gene Pairs on Block

Note: this gene was no corresponding triplicated genes.

 
@2012 Department of Genomics and Molecular Biology, Oil Crops Research Institute.


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