Basic Information
Gene Model:Bol029617
Gene Family:Not classificated
Chromosome:C03
Scaffold:Scaffold000065
Sequence:
 | 
Gene Structure
Nucleotide Length:309 bp
Transcript Length:309 bp
Protein Length:102 aa
Strand:-
Location:C03: 13906686 : 13906994
Gene CDSs(1): 1-309 |
Protein Sequence Features
Interpro
DatabaseTermsIdentifierStartEndE-valueInterPro IDDescription

Note: this gene is not annotated by InterPro, so no annotation information was collected in Bolbase.

Gene Ontology
GO TermGO TypeDescription

Note: this gene was not detected its best hit in Swiss-Prot database.

Swiss-Prot
Best HitE_value Description
O229012e-49BH151_ARATH Transcription factor bHLH151 OS=Arabidopsis thaliana GN=BHLH151 PE=2 SV=1
TrEMBL
Best HitE_value Description
C0SV934e-48C0SV93_ARATH Putative uncharacterized protein At2g47270 (Fragment) OS=Arabidopsis thaliana GN=At2g47270 PE=2 SV=1
KEGG
Best HitE_valueKOEC or Symbol Description

Note: this gene was not detected its best hit in KEGG database.

Gene Cluster
Orthologs
OrthoMCL GroupSpeciesGene List
ORTHOMCL11538(7 genes,5 taxa):Arabidopsis thalianaAT2G47270.1
ORTHOMCL11538(7 genes,5 taxa):Brassica oleraceaBol001546
ORTHOMCL11538(7 genes,5 taxa):Brassica oleraceaBol029617
ORTHOMCL11538(7 genes,5 taxa):Brassica rapaBra004465
ORTHOMCL11538(7 genes,5 taxa):Populus trichocarpaPOPTR_0002s19420.1
ORTHOMCL11538(7 genes,5 taxa):Populus trichocarpaPOPTR_0014s11360.1
ORTHOMCL11538(7 genes,5 taxa):Carica papayaevm.TU.supercontig_18.75
Tandem Duplication
ClusterGene Num.Gene List

The tandem genes of this gene was not detected with strict parameters, so there is no information collected in Bolbase.

Synteny Analysis
Synteny Genes
Compared to A.thaliana Compared to B.rapa
Synteny Regions
SpeciesRegionMapped SpeciesMapped RegionNum. of Genewise
B.oleraceaC03:13740712..14208200 (+)A.thalianaChr2:19251066..19643491 (+)36
SpeciesRegionMapped SpeciesMapped RegionNum. of Genewise
B.oleraceaC03:12208805..14010322 (+)B.rapaA09:13207547..14602505 (+)43
Trplicated Block
BlockBest HitStartENDChromosomeSubgenomeNum. of Gene Pairs on Block
JAT2G472701941156019412151Chr2Subgenome_II219
 
@2012 Department of Genomics and Molecular Biology, Oil Crops Research Institute.


logo