Basic Information
Gene Model:Bol029612
Gene Family:Not classificated
Chromosome:C03
Scaffold:Scaffold000065
Sequence:
 | 
Gene Structure
Nucleotide Length:2955 bp
Transcript Length:2112 bp
Protein Length:703 aa
Strand:-
Location:C03: 13844715 : 13847669
Gene CDSs(12): 1-270 | 353-620 | 708-1027 | 1096-1227 | 1306-1401 | 1479-1652 | 1726-1892 | 1978-2143 | 2211-2349 | 2425-2617 | 2691-2773 | 2852-2955 |
Protein Sequence Features
Interpro
DatabaseTermsIdentifierStartEndE-valueInterPro IDDescription
HMMPfamPF00955HCO3_cotransp 1 549 6.2e-17IPR011531Bicarbonate transporter, C-terminal
HMMPantherPTHR11453ANION EXCHANGE PROTE 1 639 0IPR003020Bicarbonate transporter, eukaryotic
HMMPantherPTHR11453:SF6ANION EXCHANGE PROTE 1 639 0Not foundNot found
Segsegseg 205 219 NANot foundNot found
Segsegseg 336 350 NANot foundNot found
Gene Ontology
GO TermGO TypeDescription
GO:0005452 Molecular Function inorganic anion exchanger activity
GO:0006820 Biological Process anion transport
GO:0015380 Molecular Function anion exchanger activity
GO:0016020 Cellular Component membrane
GO:0016021 Cellular Component integral to membrane
Swiss-Prot
Best HitE_value Description
Q8VYR70.0BOR1_ARATH Boron transporter 1 OS=Arabidopsis thaliana GN=BOR1 PE=1 SV=1
TrEMBL
Best HitE_value Description
A8MS820.0A8MS82_ARATH Uncharacterized protein At2g47160.2 OS=Arabidopsis thaliana GN=At2g47160 PE=4 SV=1
KEGG
Best HitE_valueKOEC or Symbol Description
xtr:1004863821e-35K13862
Gene Cluster
Orthologs
OrthoMCL GroupSpeciesGene List
ORTHOMCL110(59 genes,8 taxa):Arabidopsis thalianaAT1G15460.1
ORTHOMCL110(59 genes,8 taxa):Arabidopsis thalianaAT1G74810.1
ORTHOMCL110(59 genes,8 taxa):Arabidopsis thalianaAT2G47160.2
ORTHOMCL110(59 genes,8 taxa):Arabidopsis thalianaAT3G06450.1
ORTHOMCL110(59 genes,8 taxa):Arabidopsis thalianaAT3G62270.1
ORTHOMCL110(59 genes,8 taxa):Arabidopsis thalianaAT4G32510.1
ORTHOMCL110(59 genes,8 taxa):Arabidopsis thalianaAT5G25430.1
ORTHOMCL110(59 genes,8 taxa):Brassica oleraceaBol002517
ORTHOMCL110(59 genes,8 taxa):Brassica oleraceaBol002595
ORTHOMCL110(59 genes,8 taxa):Brassica oleraceaBol022353
ORTHOMCL110(59 genes,8 taxa):Brassica oleraceaBol029612
ORTHOMCL110(59 genes,8 taxa):Brassica oleraceaBol033775
ORTHOMCL110(59 genes,8 taxa):Brassica oleraceaBol038145
ORTHOMCL110(59 genes,8 taxa):Brassica oleraceaBol039356
ORTHOMCL110(59 genes,8 taxa):Brassica rapaBra000442
ORTHOMCL110(59 genes,8 taxa):Brassica rapaBra001198
ORTHOMCL110(59 genes,8 taxa):Brassica rapaBra004476
ORTHOMCL110(59 genes,8 taxa):Brassica rapaBra008167
ORTHOMCL110(59 genes,8 taxa):Brassica rapaBra009840
ORTHOMCL110(59 genes,8 taxa):Brassica rapaBra014404
ORTHOMCL110(59 genes,8 taxa):Brassica rapaBra021386
ORTHOMCL110(59 genes,8 taxa):Brassica rapaBra026129
ORTHOMCL110(59 genes,8 taxa):Brassica rapaBra037053
ORTHOMCL110(59 genes,8 taxa):Vitis viniferaGSVIVT01007733001
ORTHOMCL110(59 genes,8 taxa):Vitis viniferaGSVIVT01015478001
ORTHOMCL110(59 genes,8 taxa):Vitis viniferaGSVIVT01017223001
ORTHOMCL110(59 genes,8 taxa):Vitis viniferaGSVIVT01017647001
ORTHOMCL110(59 genes,8 taxa):Vitis viniferaGSVIVT01028186001
ORTHOMCL110(59 genes,8 taxa):Vitis viniferaGSVIVT01035800001
ORTHOMCL110(59 genes,8 taxa):Oryza sativaOs01t0175600-01
ORTHOMCL110(59 genes,8 taxa):Oryza sativaOs01t0175700-00
ORTHOMCL110(59 genes,8 taxa):Oryza sativaOs05t0176800-00
ORTHOMCL110(59 genes,8 taxa):Oryza sativaOs12t0566000-01
ORTHOMCL110(59 genes,8 taxa):Oryza sativaOs12t0566000-02
ORTHOMCL110(59 genes,8 taxa):Populus trichocarpaPOPTR_0001s17440.1
ORTHOMCL110(59 genes,8 taxa):Populus trichocarpaPOPTR_0002s19170.1
ORTHOMCL110(59 genes,8 taxa):Populus trichocarpaPOPTR_0003s05840.1
ORTHOMCL110(59 genes,8 taxa):Populus trichocarpaPOPTR_0006s15960.1
ORTHOMCL110(59 genes,8 taxa):Populus trichocarpaPOPTR_0006s26590.1
ORTHOMCL110(59 genes,8 taxa):Populus trichocarpaPOPTR_0008s09970.1
ORTHOMCL110(59 genes,8 taxa):Populus trichocarpaPOPTR_0012s08340.1
ORTHOMCL110(59 genes,8 taxa):Populus trichocarpaPOPTR_0012s08340.2
ORTHOMCL110(59 genes,8 taxa):Populus trichocarpaPOPTR_0012s08340.3
ORTHOMCL110(59 genes,8 taxa):Populus trichocarpaPOPTR_0012s08340.4
ORTHOMCL110(59 genes,8 taxa):Populus trichocarpaPOPTR_0012s08340.5
ORTHOMCL110(59 genes,8 taxa):Populus trichocarpaPOPTR_0012s08340.6
ORTHOMCL110(59 genes,8 taxa):Populus trichocarpaPOPTR_0012s08340.7
ORTHOMCL110(59 genes,8 taxa):Populus trichocarpaPOPTR_0014s11140.1
ORTHOMCL110(59 genes,8 taxa):Populus trichocarpaPOPTR_0015s08870.1
ORTHOMCL110(59 genes,8 taxa):Populus trichocarpaPOPTR_0018s01350.1
ORTHOMCL110(59 genes,8 taxa):Sorghum bicolorSb03g004180.1
ORTHOMCL110(59 genes,8 taxa):Sorghum bicolorSb08g018440.2
ORTHOMCL110(59 genes,8 taxa):Sorghum bicolorSb09g005350.1
ORTHOMCL110(59 genes,8 taxa):Carica papayaevm.TU.supercontig_10.181
ORTHOMCL110(59 genes,8 taxa):Carica papayaevm.TU.supercontig_146.53
ORTHOMCL110(59 genes,8 taxa):Carica papayaevm.TU.supercontig_334.2
ORTHOMCL110(59 genes,8 taxa):Carica papayaevm.TU.supercontig_67.85
ORTHOMCL110(59 genes,8 taxa):Carica papayaevm.TU.supercontig_76.41
ORTHOMCL110(59 genes,8 taxa):Carica papayaevm.TU.supercontig_91.35
Tandem Duplication
ClusterGene Num.Gene List

The tandem genes of this gene was not detected with strict parameters, so there is no information collected in Bolbase.

Synteny Analysis
Synteny Genes
Compared to A.thaliana Compared to B.rapa
Synteny Regions
SpeciesRegionMapped SpeciesMapped RegionNum. of Genewise
B.oleraceaC03:13740712..14208200 (+)A.thalianaChr2:19251066..19643491 (+)36
SpeciesRegionMapped SpeciesMapped RegionNum. of Genewise
B.oleraceaC03:12208805..14010322 (+)B.rapaA09:13207547..14602505 (+)43
Trplicated Block
BlockBest HitStartENDChromosomeSubgenomeNum. of Gene Pairs on Block
JAT2G471601935747819361147Chr2Subgenome_II219
 
@2012 Department of Genomics and Molecular Biology, Oil Crops Research Institute.


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