Basic Information
Gene Model:Bol029537
Gene Family:Not classificated
Chromosome:C03
Scaffold:Scaffold000065
Sequence:
 | 
Gene Structure
Nucleotide Length:1583 bp
Transcript Length:705 bp
Protein Length:234 aa
Strand:-
Location:C03: 13183972 : 13185554
Gene CDSs(6): 1-98 | 180-309 | 396-467 | 559-648 | 970-1151 | 1451-1583 |
Protein Sequence Features
Interpro
DatabaseTermsIdentifierStartEndE-valueInterPro IDDescription
Segsegseg 80 90 NANot foundNot found
Segsegseg 198 211 NANot foundNot found
HMMPfamPF05008V-SNARE 62 212 3.5e-50IPR007705Vesicle transport v-SNARE
HMMPantherPTHR21094GOS-28 SNARE- RELATE 6 233 4e-86Not foundNot found
Gene Ontology
GO TermGO TypeDescription
GO:0006886 Biological Process intracellular protein transport
GO:0016020 Cellular Component membrane
Swiss-Prot
Best HitE_value Description
O221511e-126GOS12_ARATH Golgi SNARE 12 protein OS=Arabidopsis thaliana GN=GOS12 PE=1 SV=1
TrEMBL
Best HitE_value Description
Q2HIF81e-125Q2HIF8_ARATH At2g45200 OS=Arabidopsis thaliana PE=2 SV=1
KEGG
Best HitE_valueKOEC or Symbol Description
ath:AT2G452001e-126K08495GOSR1, GOS1golgi SNAP receptor complex member 1
Gene Cluster
Orthologs
OrthoMCL GroupSpeciesGene List
ORTHOMCL8782(9 genes,7 taxa):Brassica oleraceaBol021715
ORTHOMCL8782(9 genes,7 taxa):Brassica oleraceaBol029537
ORTHOMCL8782(9 genes,7 taxa):Brassica rapaBra000379
ORTHOMCL8782(9 genes,7 taxa):Brassica rapaBra040321
ORTHOMCL8782(9 genes,7 taxa):Vitis viniferaGSVIVT01027649001
ORTHOMCL8782(9 genes,7 taxa):Oryza sativaOs02t0126800-01
ORTHOMCL8782(9 genes,7 taxa):Populus trichocarpaPOPTR_0002s14610.1
ORTHOMCL8782(9 genes,7 taxa):Sorghum bicolorSb04g002250.1
ORTHOMCL8782(9 genes,7 taxa):Carica papayaevm.TU.supercontig_145.5
Tandem Duplication
ClusterGene Num.Gene List

The tandem genes of this gene was not detected with strict parameters, so there is no information collected in Bolbase.

Synteny Analysis
Synteny Genes
Compared to A.thaliana Compared to B.rapa
Synteny Regions
SpeciesRegionMapped SpeciesMapped RegionNum. of Genewise
B.oleraceaC03:12393429..13372078 (+)A.thalianaChr3:21894134..22497475 (+)35
SpeciesRegionMapped SpeciesMapped RegionNum. of Genewise
B.oleraceaC03:12208805..14010322 (+)B.rapaA09:13207547..14602505 (+)43
Trplicated Block
BlockBest HitStartENDChromosomeSubgenomeNum. of Gene Pairs on Block
JAT2G452001863750318639808Chr2Subgenome_II219
 
@2012 Department of Genomics and Molecular Biology, Oil Crops Research Institute.


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