Basic Information
Gene Model:Bol029357
Gene Family:Protein Kinase Gene Families
Chromosome:C09
Scaffold:Scaffold000066_P2
Sequence:
 | 
Gene Structure
Nucleotide Length:3434 bp
Transcript Length:2034 bp
Protein Length:677 aa
Strand:-
Location:C09: 17383689 : 17387122
Gene CDSs(9): 1-183 | 255-912 | 1274-1431 | 1540-1638 | 2153-2406 | 2480-2673 | 2774-2895 | 2976-3100 | 3194-3434 |
Protein Sequence Features
Interpro
DatabaseTermsIdentifierStartEndE-valueInterPro IDDescription
PatternScanPS00108PROTEIN_KINASE_ST 439 451 NAIPR008271Serine/threonine-protein kinase, active site
Gene3DG3DSA:3.30.40.10no description 603 676 5e-21Not foundNot found
Gene3DG3DSA:1.10.510.10no description 396 597 1.3e-37Not foundNot found
Coilcoilcoiled-coil 382 403 NANot foundNot found
Coilcoilcoiled-coil 586 607 NANot foundNot found
Coilcoilcoiled-coil 311 339 NANot foundNot found
HMMPantherPTHR23258SERINE-THREONINE PRO 114 672 1.2e-148Not foundNot found
HMMPantherPTHR23258:SF447RECEPTOR-LIKE PROTEI 114 672 1.2e-148Not foundNot found
HMMPfamPF04564U-box 608 677 3.5e-20IPR003613U box domain
HMMPfamPF00069Pkinase 408 520 3e-19IPR017442Serine/threonine-protein kinase-like domain
superfamilySSF52402Adenine nucleotide a 35 184 5e-06Not foundNot found
superfamilySSF57850RING/U-box 611 665 3.6e-15Not foundNot found
superfamilySSF56112Protein kinase-like 398 614 9.9e-37IPR011009Protein kinase-like domain
ProfileScanPS50011PROTEIN_KINASE_DOM 297 586 20.217IPR000719Protein kinase, catalytic domain
Segsegseg 389 403 NANot foundNot found
Segsegseg 345 359 NANot foundNot found
Segsegseg 209 240 NANot foundNot found
HMMSmartSM00504no description 610 672 1.9e-22IPR003613U box domain
HMMSmartSM00220no description 315 586 1.1e-06IPR002290Serine/threonine-protein kinase domain
Gene Ontology
GO TermGO TypeDescription
GO:0000151 Cellular Component ubiquitin ligase complex
GO:0004672 Molecular Function protein kinase activity
GO:0004674 Molecular Function protein serine/threonine kinase activity
GO:0004842 Molecular Function ubiquitin-protein ligase activity
GO:0005524 Molecular Function ATP binding
GO:0006468 Biological Process protein phosphorylation
GO:0016567 Biological Process protein ubiquitination
Swiss-Prot
Best HitE_value Description
Q9LU471e-134PUB53_ARATH Putative U-box domain-containing protein 53 OS=Arabidopsis thaliana GN=PUB53 PE=3 SV=1
TrEMBL
Best HitE_value Description
B9R9X01e-107B9R9X0_RICCO Receptor protein kinase, putative OS=Ricinus communis GN=RCOM_1501140 PE=4 SV=1
KEGG
Best HitE_valueKOEC or Symbol Description
phu:Phum_PHUM1943702e-25K04733IRAK4interleukin-1 receptor-associated kinase 4
Gene Cluster
Orthologs
OrthoMCL GroupSpeciesGene List
ORTHOMCL443(29 genes,8 taxa):Arabidopsis thalianaAT4G25160.1
ORTHOMCL443(29 genes,8 taxa):Arabidopsis thalianaAT5G51270.1
ORTHOMCL443(29 genes,8 taxa):Arabidopsis thalianaAT5G61550.1
ORTHOMCL443(29 genes,8 taxa):Arabidopsis thalianaAT5G61560.1
ORTHOMCL443(29 genes,8 taxa):Brassica oleraceaBol007790
ORTHOMCL443(29 genes,8 taxa):Brassica oleraceaBol017004
ORTHOMCL443(29 genes,8 taxa):Brassica oleraceaBol029350
ORTHOMCL443(29 genes,8 taxa):Brassica oleraceaBol029357
ORTHOMCL443(29 genes,8 taxa):Brassica oleraceaBol039498
ORTHOMCL443(29 genes,8 taxa):Brassica oleraceaBol045287
ORTHOMCL443(29 genes,8 taxa):Brassica rapaBra012943
ORTHOMCL443(29 genes,8 taxa):Brassica rapaBra012944
ORTHOMCL443(29 genes,8 taxa):Brassica rapaBra013868
ORTHOMCL443(29 genes,8 taxa):Brassica rapaBra015196
ORTHOMCL443(29 genes,8 taxa):Brassica rapaBra015198
ORTHOMCL443(29 genes,8 taxa):Brassica rapaBra019185
ORTHOMCL443(29 genes,8 taxa):Brassica rapaBra022543
ORTHOMCL443(29 genes,8 taxa):Brassica rapaBra029317
ORTHOMCL443(29 genes,8 taxa):Brassica rapaBra029318
ORTHOMCL443(29 genes,8 taxa):Brassica rapaBra035920
ORTHOMCL443(29 genes,8 taxa):Vitis viniferaGSVIVT01014020001
ORTHOMCL443(29 genes,8 taxa):Oryza sativaOs03t0101200-00
ORTHOMCL443(29 genes,8 taxa):Oryza sativaOs06t0140800-01
ORTHOMCL443(29 genes,8 taxa):Oryza sativaOs06t0140800-02
ORTHOMCL443(29 genes,8 taxa):Oryza sativaOs10t0561500-01
ORTHOMCL443(29 genes,8 taxa):Populus trichocarpaPOPTR_0004s24130.1
ORTHOMCL443(29 genes,8 taxa):Sorghum bicolorSb02g024310.1
ORTHOMCL443(29 genes,8 taxa):Sorghum bicolorSb10g002760.1
ORTHOMCL443(29 genes,8 taxa):Carica papayaevm.TU.supercontig_13.256
Tandem Duplication
ClusterGene Num.Gene List
Cluster_14332Bol029355 Bol029357 
Synteny Analysis
Synteny Genes
Compared to A.thaliana Compared to B.rapa
Synteny Regions
SpeciesRegionMapped SpeciesMapped RegionNum. of Genewise
B.oleraceaC09:17336879..18733153 (+)A.thalianaChr5:20835137..21117787 (+)35
SpeciesRegionMapped SpeciesMapped RegionNum. of Genewise
B.oleraceaC09:17336879..20768268 (+)B.rapaA02:6737525..7693068 (+)52
Trplicated Block
BlockBest HitStartENDChromosomeSubgenomeNum. of Gene Pairs on Block

Note: this gene was no corresponding triplicated genes.

 
@2012 Department of Genomics and Molecular Biology, Oil Crops Research Institute.


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