Basic Information
Gene Model:Bol029335
Gene Family:Plant Defensins Gene Families
Chromosome:Cun
Scaffold:Scaffold000066_P1
Sequence:
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Gene Structure
Nucleotide Length:335 bp
Transcript Length:237 bp
Protein Length:78 aa
Strand:-
Location:Scaffold000066_P1: 130261 : 130595
Gene CDSs(2): 1-173 | 272-335 |
Protein Sequence Features
Interpro
DatabaseTermsIdentifierStartEndE-valueInterPro IDDescription
HMMPfamPF00304Gamma-thionin 29 78 1.7e-21IPR008176Gamma thionin
Gene3DG3DSA:3.30.30.10no description 28 78 8.3e-17Not foundNot found
PatternScanPS00940GAMMA_THIONIN 29 52 NAIPR008176Gamma thionin
Segsegseg 8 13 NANot foundNot found
superfamilySSF57095Scorpion toxin-like 28 78 2.2e-13Not foundNot found
HMMSmartSM00505no description 30 78 4e-09IPR003614Knottin
Gene Ontology
GO TermGO TypeDescription
GO:0006952 Biological Process defense response
Swiss-Prot
Best HitE_value Description
P827874e-37DEF19_ARATH Defensin-like protein 19 OS=Arabidopsis thaliana GN=PDF1.4 PE=2 SV=2
TrEMBL
Best HitE_value Description
A5AHS92e-21A5AHS9_VITVI Chromosome chr18 scaffold_1, whole genome shotgun sequence OS=Vitis vinifera GN=GSVIVT00014577001 PE=4 SV=1
KEGG
Best HitE_valueKOEC or Symbol Description

Note: this gene was not detected its best hit in KEGG database.

Gene Cluster
Orthologs
OrthoMCL GroupSpeciesGene List
ORTHOMCL17426(3 genes,3 taxa):Arabidopsis thalianaAT1G19610.1
ORTHOMCL17426(3 genes,3 taxa):Brassica oleraceaBol029335
ORTHOMCL17426(3 genes,3 taxa):Brassica rapaBra016501
Tandem Duplication
ClusterGene Num.Gene List

The tandem genes of this gene was not detected with strict parameters, so there is no information collected in Bolbase.

Synteny Analysis
Synteny Genes
Note: This gene was not anchored on pseudo-chromosomes.
Synteny Regions
SpeciesRegionMapped SpeciesMapped RegionNum. of Genewise

Note: this gene was not anchored on syntenic regions compared to A.thaliana genome.

SpeciesRegionMapped SpeciesMapped RegionNum. of Genewise

Note: this gene was not anchored on syntenic regions compared to B.rapa genome.

Trplicated Block
BlockBest HitStartENDChromosomeSubgenomeNum. of Gene Pairs on Block

Note: this gene was no corresponding triplicated genes.

 
@2012 Department of Genomics and Molecular Biology, Oil Crops Research Institute.


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