Basic Information
Gene Model:Bol029259
Gene Family:Not classificated
Chromosome:C08
Scaffold:Scaffold000067
Sequence:
 | 
Gene Structure
Nucleotide Length:1136 bp
Transcript Length:663 bp
Protein Length:220 aa
Strand:-
Location:C08: 19684347 : 19685482
Gene CDSs(5): 1-114 | 215-328 | 408-575 | 664-891 | 1098-1136 |
Protein Sequence Features
Interpro
DatabaseTermsIdentifierStartEndE-valueInterPro IDDescription
HMMPantherPTHR21094GOS-28 SNARE- RELATE 1 219 4e-76Not foundNot found
HMMPfamPF05008V-SNARE 47 198 2.6e-49IPR007705Vesicle transport v-SNARE
Coilcoilcoiled-coil 84 105 NANot foundNot found
Gene Ontology
GO TermGO TypeDescription
GO:0006886 Biological Process intracellular protein transport
GO:0016020 Cellular Component membrane
Swiss-Prot
Best HitE_value Description
Q9LMP71e-114GOS11_ARATH Golgi SNARE 11 protein OS=Arabidopsis thaliana GN=GOS11 PE=2 SV=1
TrEMBL
Best HitE_value Description
B9SMU41e-103B9SMU4_RICCO Golgi snare 11 protein, putative OS=Ricinus communis GN=RCOM_0470970 PE=4 SV=1
KEGG
Best HitE_valueKOEC or Symbol Description
ath:AT1G158801e-114K08495GOSR1, GOS1golgi SNAP receptor complex member 1
Gene Cluster
Orthologs
OrthoMCL GroupSpeciesGene List
ORTHOMCL26209(2 genes,2 taxa):Brassica oleraceaBol029259
ORTHOMCL26209(2 genes,2 taxa):Brassica rapaBra016648
Tandem Duplication
ClusterGene Num.Gene List

The tandem genes of this gene was not detected with strict parameters, so there is no information collected in Bolbase.

Synteny Analysis
Synteny Genes
Compared to A.thaliana Compared to B.rapa
Synteny Regions
SpeciesRegionMapped SpeciesMapped RegionNum. of Genewise
B.oleraceaC08:19125098..19773949 (+)A.thalianaChr1:4739873..5598447 (+)77
SpeciesRegionMapped SpeciesMapped RegionNum. of Genewise
B.oleraceaC08:18355656..19966134 (+)B.rapaA09:2440918..3966665 (-)86
Trplicated Block
BlockBest HitStartENDChromosomeSubgenomeNum. of Gene Pairs on Block
AAT1G1588054585355460333Chr1Subgenome_II291
 
@2012 Department of Genomics and Molecular Biology, Oil Crops Research Institute.


logo