Basic Information
Gene Model:Bol029238
Gene Family:Not classificated
Chromosome:C08
Scaffold:Scaffold000067
Sequence:
 | 
Gene Structure
Nucleotide Length:5929 bp
Transcript Length:4314 bp
Protein Length:1437 aa
Strand:-
Location:C08: 19528335 : 19534263
Gene CDSs(9): 1-928 | 1222-2063 | 2143-2249 | 2335-2391 | 2476-2629 | 2704-3573 | 4060-4452 | 4879-5009 | 5098-5929 |
Protein Sequence Features
Interpro
DatabaseTermsIdentifierStartEndE-valueInterPro IDDescription
HMMPantherPTHR19241ATP-BINDING CASSETTE 393 1437 0Not foundNot found
HMMPantherPTHR19241:SF10ATP-BINDING CASSETTE 393 1437 0Not foundNot found
HMMPfamPF01061ABC2_membrane 1160 1374 5.5e-75IPR013525ABC-2 type transporter
HMMPfamPF00005ABC_tran 873 1063 2.6e-29IPR003439ABC transporter-like
HMMPfamPF08370PDR_assoc 738 803 1.1e-38IPR013581Plant PDR ABC transporter associated
HMMPfamPF01061ABC2_membrane 520 733 6.4e-65IPR013525ABC-2 type transporter
HMMPfamPF00005ABC_tran 195 418 5.6e-10IPR003439ABC transporter-like
Segsegseg 1410 1427 NANot foundNot found
Segsegseg 1103 1112 NANot foundNot found
Segsegseg 1347 1359 NANot foundNot found
Segsegseg 686 703 NANot foundNot found
Segsegseg 1019 1030 NANot foundNot found
Segsegseg 205 224 NANot foundNot found
superfamilySSF52540P-loop containing nu 136 431 3.9e-34Not foundNot found
superfamilySSF52540P-loop containing nu 827 1074 6.7e-42Not foundNot found
HMMSmartSM00382no description 872 1064 6.3e-12IPR003593ATPase, AAA+ type, core
HMMSmartSM00382no description 194 419 1.6e-06IPR003593ATPase, AAA+ type, core
ProfileScanPS50893ABC_TRANSPORTER_2 835 1087 14.539IPR003439ABC transporter-like
ProfileScanPS50893ABC_TRANSPORTER_2 169 442 13.345IPR003439ABC transporter-like
Gene3DG3DSA:3.40.50.300no description 848 1085 5.3e-31Not foundNot found
Gene3DG3DSA:3.40.50.300no description 132 469 2.8e-22Not foundNot found
Gene Ontology
GO TermGO TypeDescription
GO:0000166 Molecular Function nucleotide binding
GO:0005524 Molecular Function ATP binding
GO:0016020 Cellular Component membrane
GO:0016887 Molecular Function ATPase activity
GO:0017111 Molecular Function nucleoside-triphosphatase activity
Swiss-Prot
Best HitE_value Description
Q7PC860.0AB35G_ARATH ABC transporter G family member 35 OS=Arabidopsis thaliana GN=ABCG35 PE=2 SV=1
TrEMBL
Best HitE_value Description
B9GGM30.0B9GGM3_POPTR ABC transporter family, pleiotropic drug resistance protein OS=Populus trichocarpa GN=PDR8 PE=4 SV=1
KEGG
Best HitE_valueKOEC or Symbol Description
afm:AFUA_4G010501e-151K01552E3.6.3.---
Gene Cluster
Orthologs
OrthoMCL GroupSpeciesGene List
ORTHOMCL12(170 genes,8 taxa):Arabidopsis thalianaAT1G15210.1
ORTHOMCL12(170 genes,8 taxa):Arabidopsis thalianaAT1G15520.1
ORTHOMCL12(170 genes,8 taxa):Arabidopsis thalianaAT1G59870.1
ORTHOMCL12(170 genes,8 taxa):Arabidopsis thalianaAT1G66950.1
ORTHOMCL12(170 genes,8 taxa):Arabidopsis thalianaAT2G26910.1
ORTHOMCL12(170 genes,8 taxa):Arabidopsis thalianaAT2G29940.1
ORTHOMCL12(170 genes,8 taxa):Arabidopsis thalianaAT2G36380.1
ORTHOMCL12(170 genes,8 taxa):Arabidopsis thalianaAT2G37280.1
ORTHOMCL12(170 genes,8 taxa):Arabidopsis thalianaAT3G16340.1
ORTHOMCL12(170 genes,8 taxa):Arabidopsis thalianaAT3G30842.1
ORTHOMCL12(170 genes,8 taxa):Arabidopsis thalianaAT3G53480.1
ORTHOMCL12(170 genes,8 taxa):Arabidopsis thalianaAT4G15215.1
ORTHOMCL12(170 genes,8 taxa):Arabidopsis thalianaAT4G15230.1
ORTHOMCL12(170 genes,8 taxa):Arabidopsis thalianaAT4G15233.1
ORTHOMCL12(170 genes,8 taxa):Arabidopsis thalianaAT4G15236.1
ORTHOMCL12(170 genes,8 taxa):Brassica oleraceaBol021414
ORTHOMCL12(170 genes,8 taxa):Brassica oleraceaBol025428
ORTHOMCL12(170 genes,8 taxa):Brassica oleraceaBol025537
ORTHOMCL12(170 genes,8 taxa):Brassica oleraceaBol026471
ORTHOMCL12(170 genes,8 taxa):Brassica oleraceaBol029238
ORTHOMCL12(170 genes,8 taxa):Brassica oleraceaBol029646
ORTHOMCL12(170 genes,8 taxa):Brassica oleraceaBol033303
ORTHOMCL12(170 genes,8 taxa):Brassica oleraceaBol034773
ORTHOMCL12(170 genes,8 taxa):Brassica oleraceaBol037722
ORTHOMCL12(170 genes,8 taxa):Brassica oleraceaBol038114
ORTHOMCL12(170 genes,8 taxa):Brassica oleraceaBol038115
ORTHOMCL12(170 genes,8 taxa):Brassica oleraceaBol038117
ORTHOMCL12(170 genes,8 taxa):Brassica oleraceaBol038118
ORTHOMCL12(170 genes,8 taxa):Brassica oleraceaBol038152
ORTHOMCL12(170 genes,8 taxa):Brassica oleraceaBol043058
ORTHOMCL12(170 genes,8 taxa):Brassica rapaBra000469
ORTHOMCL12(170 genes,8 taxa):Brassica rapaBra003137
ORTHOMCL12(170 genes,8 taxa):Brassica rapaBra003527
ORTHOMCL12(170 genes,8 taxa):Brassica rapaBra005207
ORTHOMCL12(170 genes,8 taxa):Brassica rapaBra005208
ORTHOMCL12(170 genes,8 taxa):Brassica rapaBra012797
ORTHOMCL12(170 genes,8 taxa):Brassica rapaBra016669
ORTHOMCL12(170 genes,8 taxa):Brassica rapaBra017198
ORTHOMCL12(170 genes,8 taxa):Brassica rapaBra017241
ORTHOMCL12(170 genes,8 taxa):Brassica rapaBra021173
ORTHOMCL12(170 genes,8 taxa):Brassica rapaBra021598
ORTHOMCL12(170 genes,8 taxa):Brassica rapaBra023065
ORTHOMCL12(170 genes,8 taxa):Brassica rapaBra025424
ORTHOMCL12(170 genes,8 taxa):Brassica rapaBra026124
ORTHOMCL12(170 genes,8 taxa):Brassica rapaBra026156
ORTHOMCL12(170 genes,8 taxa):Brassica rapaBra026157
ORTHOMCL12(170 genes,8 taxa):Brassica rapaBra027171
ORTHOMCL12(170 genes,8 taxa):Brassica rapaBra034314
ORTHOMCL12(170 genes,8 taxa):Brassica rapaBra037088
ORTHOMCL12(170 genes,8 taxa):Vitis viniferaGSVIVT01015456001
ORTHOMCL12(170 genes,8 taxa):Vitis viniferaGSVIVT01015461001
ORTHOMCL12(170 genes,8 taxa):Vitis viniferaGSVIVT01016991001
ORTHOMCL12(170 genes,8 taxa):Vitis viniferaGSVIVT01016992001
ORTHOMCL12(170 genes,8 taxa):Vitis viniferaGSVIVT01016993001
ORTHOMCL12(170 genes,8 taxa):Vitis viniferaGSVIVT01016998001
ORTHOMCL12(170 genes,8 taxa):Vitis viniferaGSVIVT01016999001
ORTHOMCL12(170 genes,8 taxa):Vitis viniferaGSVIVT01017184001
ORTHOMCL12(170 genes,8 taxa):Vitis viniferaGSVIVT01017185001
ORTHOMCL12(170 genes,8 taxa):Vitis viniferaGSVIVT01017187001
ORTHOMCL12(170 genes,8 taxa):Vitis viniferaGSVIVT01017188001
ORTHOMCL12(170 genes,8 taxa):Vitis viniferaGSVIVT01017196001
ORTHOMCL12(170 genes,8 taxa):Vitis viniferaGSVIVT01017198001
ORTHOMCL12(170 genes,8 taxa):Vitis viniferaGSVIVT01017201001
ORTHOMCL12(170 genes,8 taxa):Vitis viniferaGSVIVT01017202001
ORTHOMCL12(170 genes,8 taxa):Vitis viniferaGSVIVT01017204001
ORTHOMCL12(170 genes,8 taxa):Vitis viniferaGSVIVT01017676001
ORTHOMCL12(170 genes,8 taxa):Vitis viniferaGSVIVT01024743001
ORTHOMCL12(170 genes,8 taxa):Vitis viniferaGSVIVT01031314001
ORTHOMCL12(170 genes,8 taxa):Vitis viniferaGSVIVT01031377001
ORTHOMCL12(170 genes,8 taxa):Vitis viniferaGSVIVT01031378001
ORTHOMCL12(170 genes,8 taxa):Vitis viniferaGSVIVT01031380001
ORTHOMCL12(170 genes,8 taxa):Vitis viniferaGSVIVT01033804001
ORTHOMCL12(170 genes,8 taxa):Vitis viniferaGSVIVT01034741001
ORTHOMCL12(170 genes,8 taxa):Vitis viniferaGSVIVT01034745001
ORTHOMCL12(170 genes,8 taxa):Vitis viniferaGSVIVT01034746001
ORTHOMCL12(170 genes,8 taxa):Vitis viniferaGSVIVT01034748001
ORTHOMCL12(170 genes,8 taxa):Vitis viniferaGSVIVT01035715001
ORTHOMCL12(170 genes,8 taxa):Vitis viniferaGSVIVT01035780001
ORTHOMCL12(170 genes,8 taxa):Vitis viniferaGSVIVT01035784001
ORTHOMCL12(170 genes,8 taxa):Vitis viniferaGSVIVT01035785001
ORTHOMCL12(170 genes,8 taxa):Vitis viniferaGSVIVT01035786001
ORTHOMCL12(170 genes,8 taxa):Vitis viniferaGSVIVT01036184001
ORTHOMCL12(170 genes,8 taxa):Oryza sativaOs01t0177900-01
ORTHOMCL12(170 genes,8 taxa):Oryza sativaOs01t0177900-02
ORTHOMCL12(170 genes,8 taxa):Oryza sativaOs01t0342750-01
ORTHOMCL12(170 genes,8 taxa):Oryza sativaOs01t0609000-00
ORTHOMCL12(170 genes,8 taxa):Oryza sativaOs01t0609200-00
ORTHOMCL12(170 genes,8 taxa):Oryza sativaOs01t0609300-01
ORTHOMCL12(170 genes,8 taxa):Oryza sativaOs01t0609300-02
ORTHOMCL12(170 genes,8 taxa):Oryza sativaOs01t0609900-02
ORTHOMCL12(170 genes,8 taxa):Oryza sativaOs02t0318500-00
ORTHOMCL12(170 genes,8 taxa):Oryza sativaOs06t0554800-01
ORTHOMCL12(170 genes,8 taxa):Oryza sativaOs06t0554800-02
ORTHOMCL12(170 genes,8 taxa):Oryza sativaOs07t0522500-01
ORTHOMCL12(170 genes,8 taxa):Oryza sativaOs08t0384500-01
ORTHOMCL12(170 genes,8 taxa):Oryza sativaOs08t0544400-01
ORTHOMCL12(170 genes,8 taxa):Oryza sativaOs09t0332300-00
ORTHOMCL12(170 genes,8 taxa):Oryza sativaOs09t0332700-01
ORTHOMCL12(170 genes,8 taxa):Oryza sativaOs09t0332700-02
ORTHOMCL12(170 genes,8 taxa):Oryza sativaOs09t0333000-00
ORTHOMCL12(170 genes,8 taxa):Oryza sativaOs09t0333600-01
ORTHOMCL12(170 genes,8 taxa):Oryza sativaOs11t0587600-01
ORTHOMCL12(170 genes,8 taxa):Oryza sativaOs12t0512700-01
ORTHOMCL12(170 genes,8 taxa):Populus trichocarpaPOPTR_0001s14630.1
ORTHOMCL12(170 genes,8 taxa):Populus trichocarpaPOPTR_0001s14650.1
ORTHOMCL12(170 genes,8 taxa):Populus trichocarpaPOPTR_0001s14660.1
ORTHOMCL12(170 genes,8 taxa):Populus trichocarpaPOPTR_0001s17570.1
ORTHOMCL12(170 genes,8 taxa):Populus trichocarpaPOPTR_0001s17570.2
ORTHOMCL12(170 genes,8 taxa):Populus trichocarpaPOPTR_0001s19030.1
ORTHOMCL12(170 genes,8 taxa):Populus trichocarpaPOPTR_0001s25820.1
ORTHOMCL12(170 genes,8 taxa):Populus trichocarpaPOPTR_0002s18990.1
ORTHOMCL12(170 genes,8 taxa):Populus trichocarpaPOPTR_0003s04800.1
ORTHOMCL12(170 genes,8 taxa):Populus trichocarpaPOPTR_0003s05600.1
ORTHOMCL12(170 genes,8 taxa):Populus trichocarpaPOPTR_0003s17730.1
ORTHOMCL12(170 genes,8 taxa):Populus trichocarpaPOPTR_0003s17730.2
ORTHOMCL12(170 genes,8 taxa):Populus trichocarpaPOPTR_0003s17740.1
ORTHOMCL12(170 genes,8 taxa):Populus trichocarpaPOPTR_0003s18140.1
ORTHOMCL12(170 genes,8 taxa):Populus trichocarpaPOPTR_0006s11590.1
ORTHOMCL12(170 genes,8 taxa):Populus trichocarpaPOPTR_0006s26460.1
ORTHOMCL12(170 genes,8 taxa):Populus trichocarpaPOPTR_0008s02480.1
ORTHOMCL12(170 genes,8 taxa):Populus trichocarpaPOPTR_0008s09830.1
ORTHOMCL12(170 genes,8 taxa):Populus trichocarpaPOPTR_0008s09830.2
ORTHOMCL12(170 genes,8 taxa):Populus trichocarpaPOPTR_0008s09840.1
ORTHOMCL12(170 genes,8 taxa):Populus trichocarpaPOPTR_0009s14940.1
ORTHOMCL12(170 genes,8 taxa):Populus trichocarpaPOPTR_0010s16340.1
ORTHOMCL12(170 genes,8 taxa):Populus trichocarpaPOPTR_0010s16350.1
ORTHOMCL12(170 genes,8 taxa):Populus trichocarpaPOPTR_0010s24230.1
ORTHOMCL12(170 genes,8 taxa):Populus trichocarpaPOPTR_0015s00840.1
ORTHOMCL12(170 genes,8 taxa):Populus trichocarpaPOPTR_0015s00840.2
ORTHOMCL12(170 genes,8 taxa):Populus trichocarpaPOPTR_0018s01240.1
ORTHOMCL12(170 genes,8 taxa):Populus trichocarpaPOPTR_0018s06370.1
ORTHOMCL12(170 genes,8 taxa):Populus trichocarpaPOPTR_0455s00200.1
ORTHOMCL12(170 genes,8 taxa):Populus trichocarpaPOPTR_0455s00210.1
ORTHOMCL12(170 genes,8 taxa):Sorghum bicolorSb01g000220.1
ORTHOMCL12(170 genes,8 taxa):Sorghum bicolorSb01g016770.1
ORTHOMCL12(170 genes,8 taxa):Sorghum bicolorSb01g016775.1
ORTHOMCL12(170 genes,8 taxa):Sorghum bicolorSb02g021200.1
ORTHOMCL12(170 genes,8 taxa):Sorghum bicolorSb02g022270.1
ORTHOMCL12(170 genes,8 taxa):Sorghum bicolorSb02g024840.1
ORTHOMCL12(170 genes,8 taxa):Sorghum bicolorSb02g034950.1
ORTHOMCL12(170 genes,8 taxa):Sorghum bicolorSb03g004010.1
ORTHOMCL12(170 genes,8 taxa):Sorghum bicolorSb03g027430.1
ORTHOMCL12(170 genes,8 taxa):Sorghum bicolorSb03g027440.1
ORTHOMCL12(170 genes,8 taxa):Sorghum bicolorSb03g027460.1
ORTHOMCL12(170 genes,8 taxa):Sorghum bicolorSb03g027480.1
ORTHOMCL12(170 genes,8 taxa):Sorghum bicolorSb03g027490.1
ORTHOMCL12(170 genes,8 taxa):Sorghum bicolorSb03g027500.1
ORTHOMCL12(170 genes,8 taxa):Sorghum bicolorSb03g027510.1
ORTHOMCL12(170 genes,8 taxa):Sorghum bicolorSb03g027520.1
ORTHOMCL12(170 genes,8 taxa):Sorghum bicolorSb03g033300.1
ORTHOMCL12(170 genes,8 taxa):Sorghum bicolorSb04g007260.1
ORTHOMCL12(170 genes,8 taxa):Sorghum bicolorSb04g007270.1
ORTHOMCL12(170 genes,8 taxa):Sorghum bicolorSb04g029310.1
ORTHOMCL12(170 genes,8 taxa):Sorghum bicolorSb05g024240.1
ORTHOMCL12(170 genes,8 taxa):Sorghum bicolorSb06g019540.1
ORTHOMCL12(170 genes,8 taxa):Sorghum bicolorSb08g002900.1
ORTHOMCL12(170 genes,8 taxa):Sorghum bicolorSb08g002910.1
ORTHOMCL12(170 genes,8 taxa):Sorghum bicolorSb10g021930.1
ORTHOMCL12(170 genes,8 taxa):Sorghum bicolorSb10g024610.1
ORTHOMCL12(170 genes,8 taxa):Carica papayaevm.TU.supercontig_10.175
ORTHOMCL12(170 genes,8 taxa):Carica papayaevm.TU.supercontig_109.5
ORTHOMCL12(170 genes,8 taxa):Carica papayaevm.TU.supercontig_112.26
ORTHOMCL12(170 genes,8 taxa):Carica papayaevm.TU.supercontig_146.35
ORTHOMCL12(170 genes,8 taxa):Carica papayaevm.TU.supercontig_19.10
ORTHOMCL12(170 genes,8 taxa):Carica papayaevm.TU.supercontig_19.11
ORTHOMCL12(170 genes,8 taxa):Carica papayaevm.TU.supercontig_19.13
ORTHOMCL12(170 genes,8 taxa):Carica papayaevm.TU.supercontig_19.9
ORTHOMCL12(170 genes,8 taxa):Carica papayaevm.TU.supercontig_23.145
ORTHOMCL12(170 genes,8 taxa):Carica papayaevm.TU.supercontig_5.58
ORTHOMCL12(170 genes,8 taxa):Carica papayaevm.TU.supercontig_603.3
Tandem Duplication
ClusterGene Num.Gene List

The tandem genes of this gene was not detected with strict parameters, so there is no information collected in Bolbase.

Synteny Analysis
Synteny Genes
Compared to A.thaliana Compared to B.rapa
Synteny Regions
SpeciesRegionMapped SpeciesMapped RegionNum. of Genewise
B.oleraceaC08:19125098..19773949 (+)A.thalianaChr1:4739873..5598447 (+)77
SpeciesRegionMapped SpeciesMapped RegionNum. of Genewise
B.oleraceaC08:18355656..19966134 (+)B.rapaA09:2440918..3966665 (-)86
Trplicated Block
BlockBest HitStartENDChromosomeSubgenomeNum. of Gene Pairs on Block
AAT1G1521052313485236573Chr1Subgenome_II291
 
@2012 Department of Genomics and Molecular Biology, Oil Crops Research Institute.


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