Basic Information
Gene Model:Bol029213
Gene Family:Not classificated
Chromosome:C08
Scaffold:Scaffold000067
Sequence:
 | 
Gene Structure
Nucleotide Length:1752 bp
Transcript Length:990 bp
Protein Length:329 aa
Strand:+
Location:C08: 19354657 : 19356408
Gene CDSs(7): 1-156 | 287-366 | 495-702 | 805-937 | 1161-1345 | 1417-1551 | 1660-1752 |
Protein Sequence Features
Interpro
DatabaseTermsIdentifierStartEndE-valueInterPro IDDescription
ProfileScanPS50920SOLCAR 223 317 23.328IPR018108Mitochondrial substrate/solute carrier
ProfileScanPS50920SOLCAR 115 216 23.157IPR018108Mitochondrial substrate/solute carrier
ProfileScanPS50920SOLCAR 21 105 21.955IPR018108Mitochondrial substrate/solute carrier
HMMPfamPF00153Mito_carr 228 322 7.2e-28IPR018108Mitochondrial substrate/solute carrier
HMMPfamPF00153Mito_carr 116 221 7.2e-26IPR018108Mitochondrial substrate/solute carrier
HMMPfamPF00153Mito_carr 22 110 1.9e-30IPR018108Mitochondrial substrate/solute carrier
Segsegseg 29 42 NANot foundNot found
HMMPantherPTHR11896MITOCHONDRIAL CARRIE 24 329 1.5e-130IPR001993Mitochondrial substrate carrier
HMMPantherPTHR11896:SF34MITOCHONDRIAL CARRIE 24 329 1.5e-130Not foundNot found
superfamilySSF103506Mitochondrial carrie 18 314 3e-79IPR001993Mitochondrial substrate carrier
Gene Ontology
GO TermGO TypeDescription
GO:0005488 Molecular Function binding
GO:0006810 Biological Process transport
GO:0016020 Cellular Component membrane
GO:0055085 Biological Process transmembrane transport
Swiss-Prot
Best HitE_value Description
Q54MZ41e-56MCFB_DICDI Mitochondrial substrate carrier family protein B OS=Dictyostelium discoideum GN=mcfB PE=3 SV=1
TrEMBL
Best HitE_value Description
Q9MA271e-155Q9MA27_ARATH T5E21.6 OS=Arabidopsis thaliana PE=3 SV=1
KEGG
Best HitE_valueKOEC or Symbol Description
pan:PODANSg68641e-34K05863ANTsolute carrier family 25 (mitochondrial carrier; adenine nucleotide translocator)
Gene Cluster
Orthologs
OrthoMCL GroupSpeciesGene List
ORTHOMCL3448(12 genes,8 taxa):Arabidopsis thalianaAT1G14560.1
ORTHOMCL3448(12 genes,8 taxa):Brassica oleraceaBol029213
ORTHOMCL3448(12 genes,8 taxa):Brassica rapaBra016697
ORTHOMCL3448(12 genes,8 taxa):Vitis viniferaGSVIVT01035380001
ORTHOMCL3448(12 genes,8 taxa):Oryza sativaOs01t0571000-01
ORTHOMCL3448(12 genes,8 taxa):Oryza sativaOs01t0571000-02
ORTHOMCL3448(12 genes,8 taxa):Oryza sativaOs01t0708900-01
ORTHOMCL3448(12 genes,8 taxa):Populus trichocarpaPOPTR_0006s24280.1
ORTHOMCL3448(12 genes,8 taxa):Populus trichocarpaPOPTR_0006s24280.2
ORTHOMCL3448(12 genes,8 taxa):Sorghum bicolorSb03g025740.1
ORTHOMCL3448(12 genes,8 taxa):Sorghum bicolorSb03g032590.1
ORTHOMCL3448(12 genes,8 taxa):Carica papayaevm.TU.supercontig_7.158
Tandem Duplication
ClusterGene Num.Gene List

The tandem genes of this gene was not detected with strict parameters, so there is no information collected in Bolbase.

Synteny Analysis
Synteny Genes
Compared to A.thaliana Compared to B.rapa
Synteny Regions
SpeciesRegionMapped SpeciesMapped RegionNum. of Genewise
B.oleraceaC08:19125098..19773949 (+)A.thalianaChr1:4739873..5598447 (+)77
SpeciesRegionMapped SpeciesMapped RegionNum. of Genewise
B.oleraceaC08:18355656..19966134 (+)B.rapaA09:2440918..3966665 (-)86
Trplicated Block
BlockBest HitStartENDChromosomeSubgenomeNum. of Gene Pairs on Block
AAT1G1456049806724983284Chr1Subgenome_II291
 
@2012 Department of Genomics and Molecular Biology, Oil Crops Research Institute.


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