Basic Information
Gene Model:Bol029065
Gene Family:Transcription Factor Families
Chromosome:C01
Scaffold:Scaffold000068
Sequence:
 | 
Gene Structure
Nucleotide Length:1591 bp
Transcript Length:792 bp
Protein Length:263 aa
Strand:-
Location:C01: 1786233 : 1787823
Gene CDSs(4): 1-257 | 341-594 | 1220-1448 | 1540-1591 |
Protein Sequence Features
Interpro
DatabaseTermsIdentifierStartEndE-valueInterPro IDDescription
Segsegseg 160 179 NANot foundNot found
HMMPfamPF02042RWP-RK 194 245 4.1e-28IPR003035Plant regulator RWP-RK
Gene Ontology
GO TermGO TypeDescription

Note: this gene was not detected its best hit in Swiss-Prot database.

Swiss-Prot
Best HitE_value Description

Note: best hit of this gene was not detected in Swiss-Prot database.

TrEMBL
Best HitE_value Description
O817916e-94O81791_ARATH Putative uncharacterized protein AT4g35590 OS=Arabidopsis thaliana GN=F8D20.100 PE=2 SV=1
KEGG
Best HitE_valueKOEC or Symbol Description

Note: this gene was not detected its best hit in KEGG database.

Gene Cluster
Orthologs
OrthoMCL GroupSpeciesGene List
ORTHOMCL10344(8 genes,8 taxa):Arabidopsis thalianaAT4G35590.1
ORTHOMCL10344(8 genes,8 taxa):Brassica oleraceaBol029065
ORTHOMCL10344(8 genes,8 taxa):Brassica rapaBra011626
ORTHOMCL10344(8 genes,8 taxa):Vitis viniferaGSVIVT01026649001
ORTHOMCL10344(8 genes,8 taxa):Oryza sativaOs04t0564000-00
ORTHOMCL10344(8 genes,8 taxa):Populus trichocarpaPOPTR_0005s10400.1
ORTHOMCL10344(8 genes,8 taxa):Sorghum bicolorSb06g025420.1
ORTHOMCL10344(8 genes,8 taxa):Carica papayaevm.TU.supercontig_6.337
Tandem Duplication
ClusterGene Num.Gene List

The tandem genes of this gene was not detected with strict parameters, so there is no information collected in Bolbase.

Synteny Analysis
Synteny Genes
Compared to A.thaliana Compared to B.rapa
Synteny Regions
SpeciesRegionMapped SpeciesMapped RegionNum. of Genewise
B.oleraceaC01:1110751..4283482 (-)A.thalianaChr4:14920534..17373930 (+)410
SpeciesRegionMapped SpeciesMapped RegionNum. of Genewise
B.oleraceaC01:1523233..1879018 (+)B.rapaA10:5663218..6238427 (-)15
Trplicated Block
BlockBest HitStartENDChromosomeSubgenomeNum. of Gene Pairs on Block
UAT4G355901689290916894865Chr4Subgenome_III(LF)1224
 
@2012 Department of Genomics and Molecular Biology, Oil Crops Research Institute.


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