Basic Information
Gene Model:Bol028975
Gene Family:Transcription Factor Families
Chromosome:C01
Scaffold:Scaffold000068
Sequence:
 | 
Gene Structure
Nucleotide Length:1725 bp
Transcript Length:942 bp
Protein Length:313 aa
Strand:+
Location:C01: 1185615 : 1187339
Gene CDSs(11): 1-51 | 135-179 | 258-347 | 427-516 | 592-728 | 810-867 | 952-1000 | 1075-1202 | 1272-1349 | 1424-1549 | 1636-1725 |
Protein Sequence Features
Interpro
DatabaseTermsIdentifierStartEndE-valueInterPro IDDescription
ProfileScanPS50217BZIP 220 283 13.633IPR004827Basic-leucine zipper (bZIP) transcription factor
HMMPfamPF00170bZIP_1 218 281 3e-27IPR011616bZIP transcription factor, bZIP-1
HMMPfamPF07777MFMR 1 155 1.7e-67IPR012900G-box binding, MFMR
HMMPantherPTHR22952CAMP-RESPONSE ELEMEN 217 263 8.4e-08Not foundNot found
HMMPantherPTHR22952:SF6CAMP-RESPONSE ELEMEN 217 263 8.4e-08Not foundNot found
Coilcoilcoiled-coil 231 287 NANot foundNot found
Segsegseg 109 125 NANot foundNot found
Segsegseg 36 56 NANot foundNot found
PatternScanPS00036BZIP_BASIC 225 240 NAIPR004827Basic-leucine zipper (bZIP) transcription factor
Gene3DG3DSA:1.20.5.170no description 221 283 4.7e-05Not foundNot found
HMMSmartSM00338no description 218 282 4.4e-23IPR004827Basic-leucine zipper (bZIP) transcription factor
Gene Ontology
GO TermGO TypeDescription
GO:0003677 Molecular Function DNA binding
GO:0003700 Molecular Function sequence-specific DNA binding transcription factor activity
GO:0005634 Cellular Component nucleus
GO:0006351 Biological Process transcription, DNA-dependent
GO:0006355 Biological Process regulation of transcription, DNA-dependent
GO:0043565 Molecular Function sequence-specific DNA binding
GO:0045449 Biological Process regulation of transcription
GO:0046983 Molecular Function protein dimerization activity
Swiss-Prot
Best HitE_value Description
P427741e-148GBF1_ARATH G-box-binding factor 1 OS=Arabidopsis thaliana GN=GBF1 PE=1 SV=2
TrEMBL
Best HitE_value Description
Q393331e-180Q39333_BRANA G-box binding factor 1A OS=Brassica napus PE=2 SV=1
KEGG
Best HitE_valueKOEC or Symbol Description
ath:AT4G367301e-147K09060GBFplant G-box-binding factor
Gene Cluster
Orthologs
OrthoMCL GroupSpeciesGene List
ORTHOMCL11891(7 genes,6 taxa):Arabidopsis thalianaAT4G36730.1
ORTHOMCL11891(7 genes,6 taxa):Brassica oleraceaBol028975
ORTHOMCL11891(7 genes,6 taxa):Brassica rapaBra011701
ORTHOMCL11891(7 genes,6 taxa):Vitis viniferaGSVIVT01019009001
ORTHOMCL11891(7 genes,6 taxa):Populus trichocarpaPOPTR_0005s12750.1
ORTHOMCL11891(7 genes,6 taxa):Populus trichocarpaPOPTR_0007s12460.1
ORTHOMCL11891(7 genes,6 taxa):Carica papayaevm.TU.supercontig_158.8
Tandem Duplication
ClusterGene Num.Gene List

The tandem genes of this gene was not detected with strict parameters, so there is no information collected in Bolbase.

Synteny Analysis
Synteny Genes
Compared to A.thaliana Compared to B.rapa
Synteny Regions
SpeciesRegionMapped SpeciesMapped RegionNum. of Genewise
B.oleraceaC01:1110751..4283482 (-)A.thalianaChr4:14920534..17373930 (+)410
SpeciesRegionMapped SpeciesMapped RegionNum. of Genewise
B.oleraceaC01:12363..1525787 (+)B.rapaA08:5903069..6942262 (-)91
Trplicated Block
BlockBest HitStartENDChromosomeSubgenomeNum. of Gene Pairs on Block
UAT4G367301730961217312488Chr4Subgenome_III(LF)1224
 
@2012 Department of Genomics and Molecular Biology, Oil Crops Research Institute.


logo