Basic Information
Gene Model:Bol028933
Gene Family:Transcription Factor Families
Chromosome:C01
Scaffold:Scaffold000068
Sequence:
 | 
Gene Structure
Nucleotide Length:594 bp
Transcript Length:594 bp
Protein Length:197 aa
Strand:+
Location:C01: 954033 : 954626
Gene CDSs(1): 1-594 |
Protein Sequence Features
Interpro
DatabaseTermsIdentifierStartEndE-valueInterPro IDDescription
Gene3DG3DSA:3.30.730.10no description 27 88 1.3e-22IPR001471Pathogenesis-related transcriptional factor/ERF, DNA-binding
Segsegseg 129 140 NANot foundNot found
Segsegseg 95 100 NANot foundNot found
Segsegseg 7 22 NANot foundNot found
superfamilySSF54171DNA-binding domain 27 88 9.7e-23IPR016177DNA-binding, integrase-type
HMMPfamPF00847AP2 27 78 2.5e-19IPR001471Pathogenesis-related transcriptional factor/ERF, DNA-binding
HMMSmartSM00380no description 28 91 1.6e-37IPR001471Pathogenesis-related transcriptional factor/ERF, DNA-binding
ProfileScanPS51032AP2_ERF 28 85 22.748IPR001471Pathogenesis-related transcriptional factor/ERF, DNA-binding
Gene Ontology
GO TermGO TypeDescription
GO:0003677 Molecular Function DNA binding
GO:0003700 Molecular Function sequence-specific DNA binding transcription factor activity
GO:0006355 Biological Process regulation of transcription, DNA-dependent
Swiss-Prot
Best HitE_value Description
Q9SW632e-70RA210_ARATH Ethylene-responsive transcription factor RAP2-10 OS=Arabidopsis thaliana GN=RAP2-10 PE=2 SV=1
TrEMBL
Best HitE_value Description
C6TMR12e-42C6TMR1_SOYBN Putative uncharacterized protein OS=Glycine max PE=2 SV=1
KEGG
Best HitE_valueKOEC or Symbol Description
ath:AT4G369003e-70K09286EREBPEREBP-like factor
Gene Cluster
Orthologs
OrthoMCL GroupSpeciesGene List
ORTHOMCL11892(7 genes,5 taxa):Arabidopsis thalianaAT4G36900.1
ORTHOMCL11892(7 genes,5 taxa):Brassica oleraceaBol028933
ORTHOMCL11892(7 genes,5 taxa):Brassica rapaBra011744
ORTHOMCL11892(7 genes,5 taxa):Brassica rapaBra017811
ORTHOMCL11892(7 genes,5 taxa):Oryza sativaOs04t0648900-01
ORTHOMCL11892(7 genes,5 taxa):Oryza sativaOs04t0648900-02
ORTHOMCL11892(7 genes,5 taxa):Sorghum bicolorSb06g030660.1
Tandem Duplication
ClusterGene Num.Gene List

The tandem genes of this gene was not detected with strict parameters, so there is no information collected in Bolbase.

Synteny Analysis
Synteny Genes
Compared to A.thaliana Compared to B.rapa
Synteny Regions
SpeciesRegionMapped SpeciesMapped RegionNum. of Genewise
B.oleraceaC01:724435..1078284 (-)A.thalianaChr5:26722823..26933093 (+)13
SpeciesRegionMapped SpeciesMapped RegionNum. of Genewise
B.oleraceaC01:12363..1525787 (+)B.rapaA08:5903069..6942262 (-)91
Trplicated Block
BlockBest HitStartENDChromosomeSubgenomeNum. of Gene Pairs on Block
UAT4G369001738881417389837Chr4Subgenome_III(LF)1224
 
@2012 Department of Genomics and Molecular Biology, Oil Crops Research Institute.


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