| Basic Information |
| Gene Model: | Bol028894 |
| Gene Family: | Transcription Factor Families |
| Chromosome: | C01 |
| Scaffold: | Scaffold000068 |
| Sequence: | |
| Gene Structure |
|
| Nucleotide Length: | 741 bp |
| Transcript Length: | 741 bp |
| Protein Length: | 246 aa |
| Strand: | - |
| Location: | C01: 702248 : 702988 |
| Gene CDSs(1): | 1-741 | |
| Protein Sequence Features |
| Interpro |
 |
| Database | Terms | Identifier | Start | End | E-value | InterPro ID | Description | | PatternScan | PS00036 | BZIP_BASIC |
141 |
156 |
NA | IPR004827 | Basic-leucine zipper (bZIP) transcription factor | | HMMPfam | PF00170 | bZIP_1 |
133 |
194 |
5.6e-09 | IPR011616 | bZIP transcription factor, bZIP-1 | | HMMSmart | SM00338 | no description |
134 |
198 |
2e-14 | IPR004827 | Basic-leucine zipper (bZIP) transcription factor | | ProfileScan | PS50217 | BZIP |
136 |
199 |
10.783 | IPR004827 | Basic-leucine zipper (bZIP) transcription factor | | Coil | coil | coiled-coil |
161 |
182 |
NA | Not found | Not found | | Seg | seg | seg |
214 |
227 |
NA | Not found | Not found | | Seg | seg | seg |
171 |
184 |
NA | Not found | Not found | | Seg | seg | seg |
142 |
159 |
NA | Not found | Not found | |
| Gene Ontology |
| GO Term | GO Type | Description |
| GO:0003700 |
Molecular Function |
sequence-specific DNA binding transcription factor activity | | GO:0006355 |
Biological Process |
regulation of transcription, DNA-dependent | | GO:0043565 |
Molecular Function |
sequence-specific DNA binding | | GO:0046983 |
Molecular Function |
protein dimerization activity |
|
| Swiss-Prot |
| Best Hit | E_value |
Description | | P12959 | 4e-08 | OP2_MAIZE Regulatory protein opaque-2 OS=Zea mays GN=O2 PE=1 SV=1 |
|
| TrEMBL |
| Best Hit | E_value |
Description | | Q9T062 | 8e-91 | Q9T062_ARATH BZIP transcription factor-like protein OS=Arabidopsis thaliana GN=AT4g37730 PE=2 SV=1 |
|
| KEGG |
| Best Hit | E_value | KO | EC or Symbol |
Description | | vvi:100254083 | 2e-10 | K04371 | ERK1_2 | extracellular signal-regulated kinase 1/2 |
|
| Gene Cluster |
| Orthologs |
| OrthoMCL Group | Species | Gene List | | ORTHOMCL26180(2 genes,2 taxa): | Brassica oleracea | Bol028894 | | ORTHOMCL26180(2 genes,2 taxa): | Brassica rapa | Bra011780 |
|
| Tandem Duplication |
| Cluster | Gene Num. | Gene List | The tandem genes of this gene was not detected with strict parameters, so there is no information collected in Bolbase. |
|
| Synteny Analysis |
| Synteny Genes |
| Compared to A.thaliana |
Compared to B.rapa |
| Synteny Regions |
|
|
| Trplicated Block |
| Block | Best Hit | Start | END | Chromosome | Subgenome | Num. of Gene Pairs on Block | | U | AT4G37730 | 17723666 | 17724915 | Chr4 | Subgenome_III(LF) | 1224 | |
|
