Basic Information
Gene Model:Bol028894
Gene Family:Transcription Factor Families
Chromosome:C01
Scaffold:Scaffold000068
Sequence:
 | 
Gene Structure
Nucleotide Length:741 bp
Transcript Length:741 bp
Protein Length:246 aa
Strand:-
Location:C01: 702248 : 702988
Gene CDSs(1): 1-741 |
Protein Sequence Features
Interpro
DatabaseTermsIdentifierStartEndE-valueInterPro IDDescription
PatternScanPS00036BZIP_BASIC 141 156 NAIPR004827Basic-leucine zipper (bZIP) transcription factor
HMMPfamPF00170bZIP_1 133 194 5.6e-09IPR011616bZIP transcription factor, bZIP-1
HMMSmartSM00338no description 134 198 2e-14IPR004827Basic-leucine zipper (bZIP) transcription factor
ProfileScanPS50217BZIP 136 199 10.783IPR004827Basic-leucine zipper (bZIP) transcription factor
Coilcoilcoiled-coil 161 182 NANot foundNot found
Segsegseg 214 227 NANot foundNot found
Segsegseg 171 184 NANot foundNot found
Segsegseg 142 159 NANot foundNot found
Gene Ontology
GO TermGO TypeDescription
GO:0003700 Molecular Function sequence-specific DNA binding transcription factor activity
GO:0006355 Biological Process regulation of transcription, DNA-dependent
GO:0043565 Molecular Function sequence-specific DNA binding
GO:0046983 Molecular Function protein dimerization activity
Swiss-Prot
Best HitE_value Description
P129594e-08OP2_MAIZE Regulatory protein opaque-2 OS=Zea mays GN=O2 PE=1 SV=1
TrEMBL
Best HitE_value Description
Q9T0628e-91Q9T062_ARATH BZIP transcription factor-like protein OS=Arabidopsis thaliana GN=AT4g37730 PE=2 SV=1
KEGG
Best HitE_valueKOEC or Symbol Description
vvi:1002540832e-10K04371ERK1_2extracellular signal-regulated kinase 1/2
Gene Cluster
Orthologs
OrthoMCL GroupSpeciesGene List
ORTHOMCL26180(2 genes,2 taxa):Brassica oleraceaBol028894
ORTHOMCL26180(2 genes,2 taxa):Brassica rapaBra011780
Tandem Duplication
ClusterGene Num.Gene List

The tandem genes of this gene was not detected with strict parameters, so there is no information collected in Bolbase.

Synteny Analysis
Synteny Genes
Compared to A.thaliana Compared to B.rapa
Synteny Regions
SpeciesRegionMapped SpeciesMapped RegionNum. of Genewise
B.oleraceaC01:483860..936915 (-)A.thalianaChr4:17527650..17874803 (+)45
SpeciesRegionMapped SpeciesMapped RegionNum. of Genewise
B.oleraceaC01:12363..1525787 (+)B.rapaA08:5903069..6942262 (-)91
Trplicated Block
BlockBest HitStartENDChromosomeSubgenomeNum. of Gene Pairs on Block
UAT4G377301772366617724915Chr4Subgenome_III(LF)1224
 
@2012 Department of Genomics and Molecular Biology, Oil Crops Research Institute.


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