Basic Information
Gene Model:Bol028892
Gene Family:Transcription Factor Families
Chromosome:C01
Scaffold:Scaffold000068
Sequence:
 | 
Gene Structure
Nucleotide Length:2353 bp
Transcript Length:1590 bp
Protein Length:529 aa
Strand:-
Location:C01: 679635 : 681987
Gene CDSs(8): 1-422 | 506-582 | 671-795 | 910-998 | 1103-1111 | 1254-1336 | 1428-1953 | 2095-2353 |
Protein Sequence Features
Interpro
DatabaseTermsIdentifierStartEndE-valueInterPro IDDescription
HMMPfamPF00847AP2 357 409 1.4e-16IPR001471Pathogenesis-related transcriptional factor/ERF, DNA-binding
HMMPfamPF00847AP2 255 315 1.9e-15IPR001471Pathogenesis-related transcriptional factor/ERF, DNA-binding
superfamilySSF54171DNA-binding domain 255 325 2.1e-19IPR016177DNA-binding, integrase-type
superfamilySSF54171DNA-binding domain 357 419 2e-20IPR016177DNA-binding, integrase-type
HMMSmartSM00380no description 358 422 3.8e-34IPR001471Pathogenesis-related transcriptional factor/ERF, DNA-binding
HMMSmartSM00380no description 256 328 3.4e-27IPR001471Pathogenesis-related transcriptional factor/ERF, DNA-binding
ProfileScanPS51032AP2_ERF 358 416 18.966IPR001471Pathogenesis-related transcriptional factor/ERF, DNA-binding
ProfileScanPS51032AP2_ERF 256 322 18.755IPR001471Pathogenesis-related transcriptional factor/ERF, DNA-binding
Gene3DG3DSA:3.30.730.10no description 357 419 4.9e-15IPR001471Pathogenesis-related transcriptional factor/ERF, DNA-binding
Gene3DG3DSA:3.30.730.10no description 255 325 2.3e-11IPR001471Pathogenesis-related transcriptional factor/ERF, DNA-binding
Segsegseg 192 205 NANot foundNot found
Segsegseg 172 186 NANot foundNot found
Segsegseg 76 89 NANot foundNot found
Segsegseg 9 19 NANot foundNot found
Gene Ontology
GO TermGO TypeDescription
GO:0003677 Molecular Function DNA binding
GO:0003700 Molecular Function sequence-specific DNA binding transcription factor activity
GO:0006355 Biological Process regulation of transcription, DNA-dependent
Swiss-Prot
Best HitE_value Description
Q389140.0ANT_ARATH AP2-like ethylene-responsive transcription factor ANT OS=Arabidopsis thaliana GN=ANT PE=1 SV=2
TrEMBL
Best HitE_value Description
Q3HLW80.0Q3HLW8_BRANA Aintegumenta 2 OS=Brassica napus PE=2 SV=1
KEGG
Best HitE_valueKOEC or Symbol Description
ath:AT4G377500.0K09285OVM, ANTAP2-like factor, ANT lineage
Gene Cluster
Orthologs
OrthoMCL GroupSpeciesGene List
ORTHOMCL2162(15 genes,8 taxa):Arabidopsis thalianaAT4G37750.1
ORTHOMCL2162(15 genes,8 taxa):Brassica oleraceaBol018594
ORTHOMCL2162(15 genes,8 taxa):Brassica oleraceaBol028892
ORTHOMCL2162(15 genes,8 taxa):Brassica rapaBra010610
ORTHOMCL2162(15 genes,8 taxa):Brassica rapaBra011782
ORTHOMCL2162(15 genes,8 taxa):Brassica rapaBra017852
ORTHOMCL2162(15 genes,8 taxa):Vitis viniferaGSVIVT01007388001
ORTHOMCL2162(15 genes,8 taxa):Oryza sativaOs03t0232200-01
ORTHOMCL2162(15 genes,8 taxa):Populus trichocarpaPOPTR_0002s11550.1
ORTHOMCL2162(15 genes,8 taxa):Populus trichocarpaPOPTR_0005s19220.1
ORTHOMCL2162(15 genes,8 taxa):Populus trichocarpaPOPTR_0007s14690.1
ORTHOMCL2162(15 genes,8 taxa):Populus trichocarpaPOPTR_0014s01260.1
ORTHOMCL2162(15 genes,8 taxa):Sorghum bicolorSb01g042090.1
ORTHOMCL2162(15 genes,8 taxa):Sorghum bicolorSb02g002080.1
ORTHOMCL2162(15 genes,8 taxa):Carica papayaevm.TU.supercontig_160.32
Tandem Duplication
ClusterGene Num.Gene List

The tandem genes of this gene was not detected with strict parameters, so there is no information collected in Bolbase.

Synteny Analysis
Synteny Genes
Compared to A.thaliana Compared to B.rapa
Synteny Regions
SpeciesRegionMapped SpeciesMapped RegionNum. of Genewise
B.oleraceaC01:483860..936915 (-)A.thalianaChr4:17527650..17874803 (+)45
SpeciesRegionMapped SpeciesMapped RegionNum. of Genewise
B.oleraceaC01:12363..1525787 (+)B.rapaA08:5903069..6942262 (-)91
Trplicated Block
BlockBest HitStartENDChromosomeSubgenomeNum. of Gene Pairs on Block
UAT4G377501773951417742401Chr4Subgenome_III(LF)1224
 
@2012 Department of Genomics and Molecular Biology, Oil Crops Research Institute.


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