Basic Information
Gene Model:Bol028816
Gene Family:Protein Kinase Gene Families
Chromosome:C01
Scaffold:Scaffold000068
Sequence:
 | 
Gene Structure
Nucleotide Length:3585 bp
Transcript Length:3585 bp
Protein Length:1194 aa
Strand:+
Location:C01: 144319 : 147903
Gene CDSs(1): 1-3585 |
Protein Sequence Features
Interpro
DatabaseTermsIdentifierStartEndE-valueInterPro IDDescription
Segsegseg 383 399 NANot foundNot found
Segsegseg 812 823 NANot foundNot found
Segsegseg 337 348 NANot foundNot found
Segsegseg 3 31 NANot foundNot found
Segsegseg 92 106 NANot foundNot found
superfamilySSF52047RNI-like 331 758 6.1e-75Not foundNot found
superfamilySSF52058L domain-like 52 381 1.3e-55Not foundNot found
superfamilySSF56112Protein kinase-like 866 1173 2.3e-76IPR011009Protein kinase-like domain
PatternScanPS00108PROTEIN_KINASE_ST 1003 1015 NAIPR008271Serine/threonine-protein kinase, active site
PatternScanPS00107PROTEIN_KINASE_ATP 887 910 NAIPR017441Protein kinase, ATP binding site
Gene3DG3DSA:1.10.510.10no description 959 1164 8.3e-48Not foundNot found
Gene3DG3DSA:3.80.10.10no description 489 769 1e-58Not foundNot found
Gene3DG3DSA:3.30.200.20no description 855 955 3.2e-21Not foundNot found
Gene3DG3DSA:3.80.10.10no description 289 487 1.4e-42Not foundNot found
Gene3DG3DSA:3.80.10.10no description 28 285 1.5e-34Not foundNot found
HMMPfamPF00069Pkinase 881 1081 3.9e-41IPR017442Serine/threonine-protein kinase-like domain
HMMPfamPF00560LRR_1 725 746 1.2IPR001611Leucine-rich repeat
HMMPfamPF00560LRR_1 560 583 1.3IPR001611Leucine-rich repeat
HMMPfamPF00560LRR_1 677 699 1.5IPR001611Leucine-rich repeat
HMMPfamPF00560LRR_1 512 534 0.0024IPR001611Leucine-rich repeat
HMMPfamPF00560LRR_1 536 558 0.98IPR001611Leucine-rich repeat
HMMPfamPF00560LRR_1 488 510 0.0094IPR001611Leucine-rich repeat
HMMPfamPF00560LRR_1 440 462 0.0086IPR001611Leucine-rich repeat
HMMPfamPF00560LRR_1 416 438 0.0016IPR001611Leucine-rich repeat
HMMPfamPF00560LRR_1 365 387 0.0005IPR001611Leucine-rich repeat
HMMPfamPF00560LRR_1 340 363 1.7IPR001611Leucine-rich repeat
HMMPfamPF00560LRR_1 291 313 1.1IPR001611Leucine-rich repeat
HMMPfamPF00560LRR_1 245 267 1.3IPR001611Leucine-rich repeat
HMMPfamPF00560LRR_1 173 201 1.9IPR001611Leucine-rich repeat
HMMPfamPF00560LRR_1 222 243 0.011IPR001611Leucine-rich repeat
HMMPfamPF08263LRRNT_2 31 69 1.1e-07IPR013210Leucine-rich repeat, N-terminal
HMMSmartSM00219no description 881 1153 1.2e-33IPR020635Tyrosine-protein kinase, subgroup, catalytic domain
HMMSmartSM00220no description 881 1154 1e-34IPR002290Serine/threonine-protein kinase domain
HMMSmartSM00369no description 559 582 3.4e+02IPR003591Leucine-rich repeat, typical subtype
HMMSmartSM00369no description 699 723 56IPR003591Leucine-rich repeat, typical subtype
HMMSmartSM00369no description 486 510 2.9e+02IPR003591Leucine-rich repeat, typical subtype
HMMSmartSM00369no description 534 558 59IPR003591Leucine-rich repeat, typical subtype
HMMSmartSM00369no description 363 387 26IPR003591Leucine-rich repeat, typical subtype
HMMSmartSM00369no description 289 313 1.1e+02IPR003591Leucine-rich repeat, typical subtype
HMMSmartSM00369no description 171 201 58IPR003591Leucine-rich repeat, typical subtype
HMMPantherPTHR23258SERINE-THREONINE PRO 297 1061 0Not foundNot found
HMMPantherPTHR23258:SF122SERINE/THREONINE-PRO 297 1061 0Not foundNot found
ProfileScanPS50011PROTEIN_KINASE_DOM 881 1156 37.192IPR000719Protein kinase, catalytic domain
Gene Ontology
GO TermGO TypeDescription
GO:0004672 Molecular Function protein kinase activity
GO:0004674 Molecular Function protein serine/threonine kinase activity
GO:0005515 Molecular Function protein binding
GO:0005524 Molecular Function ATP binding
GO:0006468 Biological Process protein phosphorylation
Swiss-Prot
Best HitE_value Description
O224760.0BRI1_ARATH Protein BRASSINOSTEROID INSENSITIVE 1 OS=Arabidopsis thaliana GN=BRI1 PE=1 SV=1
TrEMBL
Best HitE_value Description
C6FF790.0C6FF79_SOYBN Brassinosteroid receptor OS=Glycine max PE=2 SV=1
KEGG
Best HitE_valueKOEC or Symbol Description
ath:AT4G394000.0K13415BRI1--
Gene Cluster
Orthologs
OrthoMCL GroupSpeciesGene List
ORTHOMCL267(36 genes,8 taxa):Arabidopsis thalianaAT1G55610.1
ORTHOMCL267(36 genes,8 taxa):Arabidopsis thalianaAT2G01950.1
ORTHOMCL267(36 genes,8 taxa):Arabidopsis thalianaAT4G39400.1
ORTHOMCL267(36 genes,8 taxa):Brassica oleraceaBol001136
ORTHOMCL267(36 genes,8 taxa):Brassica oleraceaBol016018
ORTHOMCL267(36 genes,8 taxa):Brassica oleraceaBol018550
ORTHOMCL267(36 genes,8 taxa):Brassica oleraceaBol028816
ORTHOMCL267(36 genes,8 taxa):Brassica oleraceaBol035223
ORTHOMCL267(36 genes,8 taxa):Brassica oleraceaBol040377
ORTHOMCL267(36 genes,8 taxa):Brassica rapaBra010684
ORTHOMCL267(36 genes,8 taxa):Brassica rapaBra011862
ORTHOMCL267(36 genes,8 taxa):Brassica rapaBra024839
ORTHOMCL267(36 genes,8 taxa):Brassica rapaBra024840
ORTHOMCL267(36 genes,8 taxa):Brassica rapaBra030846
ORTHOMCL267(36 genes,8 taxa):Brassica rapaBra033615
ORTHOMCL267(36 genes,8 taxa):Brassica rapaBra034681
ORTHOMCL267(36 genes,8 taxa):Vitis viniferaGSVIVT01011586001
ORTHOMCL267(36 genes,8 taxa):Vitis viniferaGSVIVT01014856001
ORTHOMCL267(36 genes,8 taxa):Vitis viniferaGSVIVT01022261001
ORTHOMCL267(36 genes,8 taxa):Oryza sativaOs01t0718300-01
ORTHOMCL267(36 genes,8 taxa):Oryza sativaOs01t0718300-02
ORTHOMCL267(36 genes,8 taxa):Oryza sativaOs09t0293500-01
ORTHOMCL267(36 genes,8 taxa):Oryza sativaOs10t0114400-01
ORTHOMCL267(36 genes,8 taxa):Populus trichocarpaPOPTR_0001s47680.1
ORTHOMCL267(36 genes,8 taxa):Populus trichocarpaPOPTR_0005s08880.1
ORTHOMCL267(36 genes,8 taxa):Populus trichocarpaPOPTR_0007s06940.1
ORTHOMCL267(36 genes,8 taxa):Populus trichocarpaPOPTR_0008s13990.1
ORTHOMCL267(36 genes,8 taxa):Populus trichocarpaPOPTR_0010s11150.1
ORTHOMCL267(36 genes,8 taxa):Populus trichocarpaPOPTR_0011s17240.1
ORTHOMCL267(36 genes,8 taxa):Sorghum bicolorSb01g026940.1
ORTHOMCL267(36 genes,8 taxa):Sorghum bicolorSb02g019470.1
ORTHOMCL267(36 genes,8 taxa):Sorghum bicolorSb03g012040.1
ORTHOMCL267(36 genes,8 taxa):Sorghum bicolorSb03g032990.1
ORTHOMCL267(36 genes,8 taxa):Carica papayaevm.TU.supercontig_12.59
ORTHOMCL267(36 genes,8 taxa):Carica papayaevm.TU.supercontig_2.108
ORTHOMCL267(36 genes,8 taxa):Carica papayaevm.TU.supercontig_72.17
Tandem Duplication
ClusterGene Num.Gene List

The tandem genes of this gene was not detected with strict parameters, so there is no information collected in Bolbase.

Synteny Analysis
Synteny Genes
Compared to A.thaliana Compared to B.rapa
Synteny Regions
SpeciesRegionMapped SpeciesMapped RegionNum. of Genewise
B.oleraceaC01:10858..479322 (+)A.thalianaChr4:18076459..18581585 (+)75
SpeciesRegionMapped SpeciesMapped RegionNum. of Genewise
B.oleraceaC01:10858..244257 (+)B.rapaA09:4877426..5218269 (+)17
Trplicated Block
BlockBest HitStartENDChromosomeSubgenomeNum. of Gene Pairs on Block

Note: this gene was no corresponding triplicated genes.

 
@2012 Department of Genomics and Molecular Biology, Oil Crops Research Institute.


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