Basic Information
Gene Model:Bol028786
Gene Family:Not classificated
Chromosome:C01
Scaffold:Scaffold000068
Sequence:
 | 
Gene Structure
Nucleotide Length:1353 bp
Transcript Length:1353 bp
Protein Length:450 aa
Strand:+
Location:C01: 36733 : 38085
Gene CDSs(1): 1-1353 |
Protein Sequence Features
Interpro
DatabaseTermsIdentifierStartEndE-valueInterPro IDDescription
Gene3DG3DSA:3.60.20.10no description 20 326 2.7e-92Not foundNot found
HMMPfamPF00156Pribosyltran 274 396 1.2e-18IPR000836Phosphoribosyltransferase
HMMPfamPF00310GATase_2 20 214 9.5e-34IPR000583Glutamine amidotransferase, class-II
HMMPantherPTHR11907AMIDOPHOSPHORIBOSYLT 7 447 1.2e-203IPR005854Amidophosphoribosyl transferase
HMMPIRPIRSF000485Amidophosphoribosylt 9 450 1.6e-167IPR005854Amidophosphoribosyl transferase
ProfileScanPS51278GATASE_TYPE_2 20 239 46.383IPR017932Glutamine amidotransferase, type II
HMMTigrTIGR01134purF: amidophosphori 20 448 1.1e-172IPR005854Amidophosphoribosyl transferase
superfamilySSF53271PRTase-like 256 446 5e-58Not foundNot found
superfamilySSF56235N-terminal nucleophi 20 275 4.3e-80Not foundNot found
Gene Ontology
GO TermGO TypeDescription
GO:0004044 Molecular Function amidophosphoribosyltransferase activity
GO:0008152 Biological Process metabolic process
GO:0009113 Biological Process purine base biosynthetic process
GO:0009116 Biological Process nucleoside metabolic process
Swiss-Prot
Best HitE_value Description
P524180.0PUR1_SOYBN Amidophosphoribosyltransferase, chloroplastic OS=Glycine max GN=PUR1 PE=2 SV=1
TrEMBL
Best HitE_value Description
Q9T0J50.0Q9T0J5_ARATH Amidophosphoribosyltransferase-like protein OS=Arabidopsis thaliana GN=AT4g38880 PE=2 SV=1
KEGG
Best HitE_valueKOEC or Symbol Description
ath:AT4G388800.0K00764E2.4.2.14, purFamidophosphoribosyltransferase
Gene Cluster
Orthologs
OrthoMCL GroupSpeciesGene List
ORTHOMCL1500(17 genes,8 taxa):Arabidopsis thalianaAT2G16570.1
ORTHOMCL1500(17 genes,8 taxa):Arabidopsis thalianaAT4G34740.1
ORTHOMCL1500(17 genes,8 taxa):Arabidopsis thalianaAT4G38880.1
ORTHOMCL1500(17 genes,8 taxa):Brassica oleraceaBol013690
ORTHOMCL1500(17 genes,8 taxa):Brassica oleraceaBol028786
ORTHOMCL1500(17 genes,8 taxa):Brassica oleraceaBol031840
ORTHOMCL1500(17 genes,8 taxa):Brassica rapaBra001980
ORTHOMCL1500(17 genes,8 taxa):Brassica rapaBra011558
ORTHOMCL1500(17 genes,8 taxa):Brassica rapaBra011888
ORTHOMCL1500(17 genes,8 taxa):Vitis viniferaGSVIVT01024157001
ORTHOMCL1500(17 genes,8 taxa):Oryza sativaOs05t0430800-01
ORTHOMCL1500(17 genes,8 taxa):Populus trichocarpaPOPTR_0004s17100.1
ORTHOMCL1500(17 genes,8 taxa):Populus trichocarpaPOPTR_0009s12850.1
ORTHOMCL1500(17 genes,8 taxa):Populus trichocarpaPOPTR_0803s00200.1
ORTHOMCL1500(17 genes,8 taxa):Sorghum bicolorSb03g041300.1
ORTHOMCL1500(17 genes,8 taxa):Sorghum bicolorSb09g021310.1
ORTHOMCL1500(17 genes,8 taxa):Carica papayaevm.TU.supercontig_150.4
Tandem Duplication
ClusterGene Num.Gene List

The tandem genes of this gene was not detected with strict parameters, so there is no information collected in Bolbase.

Synteny Analysis
Synteny Genes
Compared to A.thaliana Compared to B.rapa
Synteny Regions
SpeciesRegionMapped SpeciesMapped RegionNum. of Genewise
B.oleraceaC01:10858..479322 (+)A.thalianaChr4:18076459..18581585 (+)75
SpeciesRegionMapped SpeciesMapped RegionNum. of Genewise
B.oleraceaC01:10858..244257 (+)B.rapaA09:4877426..5218269 (+)17
Trplicated Block
BlockBest HitStartENDChromosomeSubgenomeNum. of Gene Pairs on Block

Note: this gene was no corresponding triplicated genes.

 
@2012 Department of Genomics and Molecular Biology, Oil Crops Research Institute.


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