Basic Information
Gene Model:Bol028721
Gene Family:Protein tyrosine phosphatase (PTP) family
Chromosome:C01
Scaffold:Scaffold000069_P1
Sequence:
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Gene Structure
Nucleotide Length:2442 bp
Transcript Length:684 bp
Protein Length:227 aa
Strand:-
Location:C01: 26392465 : 26394906
Gene CDSs(6): 1-220 | 309-429 | 515-650 | 722-845 | 1660-1722 | 2423-2442 |
Protein Sequence Features
Interpro
DatabaseTermsIdentifierStartEndE-valueInterPro IDDescription
ProfileScanPS50056TYR_PHOSPHATASE_2 125 183 13.075IPR000387Dual-specific/protein-tyrosine phosphatase, conserved region
ProfileScanPS50054TYR_PHOSPHATASE_DUAL 63 203 38.919IPR020422Dual specificity phosphatase, subgroup, catalytic domain
HMMPfamPF00782DSPc 63 201 8e-45IPR000340Dual specificity phosphatase, catalytic domain
Gene3DG3DSA:3.90.190.10no description 36 204 6e-49Not foundNot found
superfamilySSF52799(Phosphotyrosine pro 61 202 2.3e-48Not foundNot found
Segsegseg 26 38 NANot foundNot found
HMMPantherPTHR10159DUAL SPECIFICITY PRO 60 207 1.3e-100Not foundNot found
HMMPantherPTHR10159:SF33SKRP-RELATED DUAL SP 60 207 1.3e-100Not foundNot found
HMMSmartSM00195no description 63 201 2.7e-44IPR020422Dual specificity phosphatase, subgroup, catalytic domain
Gene Ontology
GO TermGO TypeDescription
GO:0006470 Biological Process protein dephosphorylation
GO:0008138 Molecular Function protein tyrosine/serine/threonine phosphatase activity
GO:0016311 Biological Process dephosphorylation
GO:0016791 Molecular Function phosphatase activity
Swiss-Prot
Best HitE_value Description
Q6IVY45e-25SSH_XENLA Protein phosphatase Slingshot homolog OS=Xenopus laevis GN=ssh PE=1 SV=2
TrEMBL
Best HitE_value Description
B3H4F52e-73B3H4F5_ARATH Uncharacterized protein At3g23610.2 OS=Arabidopsis thaliana GN=At3g23610 PE=4 SV=1
KEGG
Best HitE_valueKOEC or Symbol Description
ath:AT3G236102e-74K05766SSHslingshot
Gene Cluster
Orthologs
OrthoMCL GroupSpeciesGene List
ORTHOMCL26168(2 genes,2 taxa):Brassica oleraceaBol028721
ORTHOMCL26168(2 genes,2 taxa):Brassica rapaBra028323
Tandem Duplication
ClusterGene Num.Gene List

The tandem genes of this gene was not detected with strict parameters, so there is no information collected in Bolbase.

Synteny Analysis
Synteny Genes
Compared to A.thaliana Compared to B.rapa
Synteny Regions
SpeciesRegionMapped SpeciesMapped RegionNum. of Genewise
B.oleraceaC01:26047774..28534735 (+)A.thalianaChr4:8020951..8715339 (+)38
SpeciesRegionMapped SpeciesMapped RegionNum. of Genewise
B.oleraceaC01:25569123..27176068 (+)B.rapaA07:7171993..8259055 (-)37
Trplicated Block
BlockBest HitStartENDChromosomeSubgenomeNum. of Gene Pairs on Block
FAT3G2361084781228479857Chr3Subgenome_I317
 
@2012 Department of Genomics and Molecular Biology, Oil Crops Research Institute.


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