Basic Information
Gene Model:Bol028571
Gene Family:Not classificated
Chromosome:C02
Scaffold:Scaffold000070
Sequence:
 | 
Gene Structure
Nucleotide Length:1051 bp
Transcript Length:669 bp
Protein Length:222 aa
Strand:+
Location:C02: 13534699 : 13535749
Gene CDSs(5): 1-153 | 242-412 | 486-674 | 769-827 | 955-1051 |
Protein Sequence Features
Interpro
DatabaseTermsIdentifierStartEndE-valueInterPro IDDescription
Coilcoilcoiled-coil 131 152 NANot foundNot found
Coilcoilcoiled-coil 68 89 NANot foundNot found
Gene3DG3DSA:1.20.5.110no description 128 192 2.1e-19Not foundNot found
Segsegseg 137 150 NANot foundNot found
Segsegseg 205 216 NANot foundNot found
HMMPfamPF05008V-SNARE 42 197 4.1e-58IPR007705Vesicle transport v-SNARE
HMMPantherPTHR21230VESICLE TRANSPORT V- 1 220 1.8e-88Not foundNot found
HMMPantherPTHR21230:SF3VESICLE TRANSPORT V- 1 220 1.8e-88Not foundNot found
Gene Ontology
GO TermGO TypeDescription
GO:0006886 Biological Process intracellular protein transport
GO:0016020 Cellular Component membrane
Swiss-Prot
Best HitE_value Description
Q9SEL51e-108VTI12_ARATH Vesicle transport v-SNARE 12 OS=Arabidopsis thaliana GN=VTI12 PE=1 SV=3
TrEMBL
Best HitE_value Description
B9HXP41e-96B9HXP4_POPTR Predicted protein OS=Populus trichocarpa GN=POPTRDRAFT_833700 PE=4 SV=1
KEGG
Best HitE_valueKOEC or Symbol Description
ath:AT1G266701e-108K08493VTI1vesicle transport through interaction with t-SNAREs 1
Gene Cluster
Orthologs
OrthoMCL GroupSpeciesGene List
ORTHOMCL5659(10 genes,6 taxa):Arabidopsis thalianaAT1G26670.1
ORTHOMCL5659(10 genes,6 taxa):Brassica oleraceaBol028571
ORTHOMCL5659(10 genes,6 taxa):Brassica oleraceaBol043339
ORTHOMCL5659(10 genes,6 taxa):Brassica rapaBra012446
ORTHOMCL5659(10 genes,6 taxa):Brassica rapaBra041108
ORTHOMCL5659(10 genes,6 taxa):Vitis viniferaGSVIVT01012494001
ORTHOMCL5659(10 genes,6 taxa):Populus trichocarpaPOPTR_0008s09050.1
ORTHOMCL5659(10 genes,6 taxa):Populus trichocarpaPOPTR_0008s09050.2
ORTHOMCL5659(10 genes,6 taxa):Populus trichocarpaPOPTR_0010s17150.1
ORTHOMCL5659(10 genes,6 taxa):Carica papayaevm.TU.supercontig_1.63
Tandem Duplication
ClusterGene Num.Gene List

The tandem genes of this gene was not detected with strict parameters, so there is no information collected in Bolbase.

Synteny Analysis
Synteny Genes
Compared to A.thaliana Compared to B.rapa
Synteny Regions
SpeciesRegionMapped SpeciesMapped RegionNum. of Genewise
B.oleraceaC02:12127295..13913455 (+)A.thalianaChr1:25684314..26226652 (+)69
SpeciesRegionMapped SpeciesMapped RegionNum. of Genewise
B.oleraceaC02:13224027..13924116 (+)B.rapaA07:16236710..16595373 (-)12
Trplicated Block
BlockBest HitStartENDChromosomeSubgenomeNum. of Gene Pairs on Block

Note: this gene was no corresponding triplicated genes.

 
@2012 Department of Genomics and Molecular Biology, Oil Crops Research Institute.


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